Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C23
(591 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 104 2e-21
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 86 7e-16
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 83 5e-15
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 83 5e-15
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 82 1e-14
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 80 3e-14
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 79 6e-14
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 79 8e-14
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 75 1e-12
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 74 2e-12
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 74 3e-12
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 70 4e-11
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 65 1e-09
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 64 3e-09
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 56 5e-07
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 52 8e-06
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 41 0.019
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 40 0.044
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.10
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 38 0.13
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 36 0.71
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 35 1.2
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 33 6.6
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 104 bits (249), Expect = 2e-21
Identities = 48/86 (55%), Positives = 58/86 (67%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+ WQR V TWFNQPAR+ R ++ +RPIVRCPTVRYHTKVRAGRG
Sbjct: 16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRG 75
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
F+L E+R AG++ ARTIGI+V PR
Sbjct: 76 FSLEELRVAGIHKKVARTIGISVDPR 101
Score = 77.8 bits (183), Expect = 2e-13
Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +2
Query: 371 PVXRNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQ 547
P RNKS ESLQ NVQR+KEY ++LILFP K KG+++ KLATQL GP+MPV+
Sbjct: 100 PRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRN 159
Query: 548 PAPKSVARPITEXE 589
K AR ITE E
Sbjct: 160 VYKKEKARVITEEE 173
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 85.8 bits (203), Expect = 7e-16
Identities = 39/86 (45%), Positives = 54/86 (62%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+ WQR VK WF+QP + R ++ LRP VRCPT+RY+TK+R+GRG
Sbjct: 16 KDWQRRVKVWFDQPGAKKR-RRTAREAKAAKLGLRPVQLLRPAVRCPTLRYNTKIRSGRG 74
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FT+ E++AAGL +AR++GI V R
Sbjct: 75 FTIEEVKAAGLGKKYARSVGIPVDHR 100
Score = 45.2 bits (102), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFPKGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPK 559
RNKS ESL++NV+RIK Y ARL++ PK K K + + A + ++P+
Sbjct: 102 RNKSEESLKLNVERIKAYQARLVVIPKLTKKNKDKKVDLSNVEAVRQVQSVLPLPAGTEA 161
Query: 560 SVARPITEXE 589
R IT E
Sbjct: 162 EKPRAITSEE 171
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 83.0 bits (196), Expect = 5e-15
Identities = 38/86 (44%), Positives = 53/86 (61%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+ WQ+ VK WFNQP ++ R K LRP+V CP+ RY +KVRAGRG
Sbjct: 15 KKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHCPSERYKSKVRAGRG 73
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FT +E++ AG++ +AR+ G+AV PR
Sbjct: 74 FTFQELKQAGMSDKYARSFGVAVDPR 99
Score = 38.3 bits (85), Expect = 0.13
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 371 PVXRNKSVESLQINVQRIKEYXARLILFPKGK-KVLK 478
P RN+ ES+ N+QR+ EY +RLI P K KVLK
Sbjct: 98 PRRRNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLK 134
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 83.0 bits (196), Expect = 5e-15
Identities = 39/86 (45%), Positives = 52/86 (60%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+HWQ +VKTWFNQPAR+ R + LRP+V T++Y+ KVRAG+G
Sbjct: 14 KHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKG 73
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FTL E++ AG+ A TIGI+V R
Sbjct: 74 FTLEELKVAGIPKKLAPTIGISVDHR 99
Score = 50.8 bits (116), Expect = 2e-05
Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPV 541
+N+S+E LQ NVQR+K Y A+L++FP + ++V G++ ATQ++G MP+
Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPI 155
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 81.8 bits (193), Expect = 1e-14
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+ WQR V+ F+QP R++R ++ + LRP+VRCPTV+Y+ +VR GRG
Sbjct: 33 KDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVGRG 91
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FTL E++ AG+ ART+GIAV R
Sbjct: 92 FTLAELKEAGIPKKLARTVGIAVDHR 117
Score = 36.7 bits (81), Expect = 0.41
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 383 NKSVESLQINVQRIKEYXARLILFPK 460
N S ESL NV R+K+Y ARLILFP+
Sbjct: 120 NYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 80.2 bits (189), Expect = 3e-14
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+HWQ V+ F+Q ++ +Q+ + LRP+VR PTV+Y+ KVRAGRG
Sbjct: 16 KHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRG 74
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FTL E++A G+ P +ARTIGI+V R
Sbjct: 75 FTLAELKAVGIAPKYARTIGISVDHR 100
Score = 41.5 bits (93), Expect = 0.014
Identities = 24/66 (36%), Positives = 37/66 (56%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFPKGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPK 559
+NKS E+ NV R++EY ++L++F K K + + E AT PV+QPAP+
Sbjct: 102 QNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSAT------FPVEQPAPE 155
Query: 560 SVARPI 577
S R +
Sbjct: 156 SGLRAV 161
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 79.4 bits (187), Expect = 6e-14
Identities = 40/86 (46%), Positives = 49/86 (56%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
++W VKT+F+ PAR R + LRPIVRCPTVRY+ K R GRG
Sbjct: 36 KYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIVRCPTVRYNMKTRLGRG 95
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FT +E+ AAG +P AR GIAV R
Sbjct: 96 FTPKELVAAGFDPALARFQGIAVDAR 121
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 79.0 bits (186), Expect = 8e-14
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+HW RFVKT++NQPA + R +Q LRP+VR T++Y++ + GRG
Sbjct: 14 KHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQTIKYNSVQKLGRG 72
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
F+L E++ AGLN FART+GI+V R
Sbjct: 73 FSLIELKEAGLNAAFARTVGISVDHR 98
Score = 35.5 bits (78), Expect = 0.94
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFPK--GKK---VLKGEANEXXRKLATQLRGPLMPVQ 544
RN + E L NV+R+K Y ++L+L+P+ GK V+K NE Q P +
Sbjct: 100 RNLNQEELNNNVKRLKAYLSKLVLYPRVAGKPKNGVVKDSTNEVVAHPVAQNTNPEVLTF 159
Query: 545 QPAPK 559
Q PK
Sbjct: 160 QRTPK 164
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 74.9 bits (176), Expect = 1e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +1
Query: 235 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVXPR 375
+RPIVRCPTVRYHTKVR GRGF+L EIR AG++ ARTI I+V P+
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPK 59
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 74.1 bits (174), Expect = 2e-12
Identities = 37/88 (42%), Positives = 52/88 (59%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
++++R++KTW+NQP R+ + ++ LRPIV PT RY+ K R GRG
Sbjct: 14 KNYKRWIKTWYNQPGRK-QSRRIARQKAVAEAGFRPVGMLRPIVHPPTQRYNMKTRLGRG 72
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPRXT 381
FTL E+ A G+N A +IGIAV R T
Sbjct: 73 FTLEELSACGINKKAAMSIGIAVDHRRT 100
Score = 34.3 bits (75), Expect = 2.2
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 389 SVESLQINVQRIKEYXARLILFP-KGKKVLKGEA 487
S E+ QINV R+K+Y ++L P KGKK KG A
Sbjct: 103 SEETFQINVDRLKKYINGIVLQPRKGKKTKKGFA 136
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 73.7 bits (173), Expect = 3e-12
Identities = 38/80 (47%), Positives = 50/80 (62%)
Frame = +1
Query: 136 VKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 315
VK +FNQPA++ R ++ + LRP V CPTVRY+ K R GRGF+L E+
Sbjct: 38 VKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-LRPQVNCPTVRYNMKRRLGRGFSLEEL 96
Query: 316 RAAGLNPVFARTIGIAVXPR 375
+AAG+ P +ARTIGI V R
Sbjct: 97 KAAGVKPRYARTIGIRVDRR 116
Score = 50.0 bits (114), Expect = 4e-05
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLR 523
+NKS E + INVQR+K Y ++L+LFP KK KG+A E K ATQ R
Sbjct: 118 KNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDR 166
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 70.1 bits (164), Expect = 4e-11
Identities = 35/86 (40%), Positives = 48/86 (55%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+ W+ V TW QP R+ R Q + L+P V C R++ K+R GRG
Sbjct: 14 KDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLGRG 72
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
F+L+E+RAA ++ ARTIGIAV PR
Sbjct: 73 FSLKELRAAKIDKNLARTIGIAVDPR 98
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 64.9 bits (151), Expect = 1e-09
Identities = 34/84 (40%), Positives = 46/84 (54%)
Frame = +1
Query: 124 WQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFT 303
WQR+V+ FN+ +R + ++ L P+V CPT RY+ K R G+GFT
Sbjct: 17 WQRYVRVDFNKNIKR-KQRRLLREKRRKQNGGTPIEKLHPVVHCPTQRYNYKTRLGKGFT 75
Query: 304 LREIRAAGLNPVFARTIGIAVXPR 375
L EI+A L P AR+IGI V R
Sbjct: 76 LEEIKAVKLTPSAARSIGIIVDKR 99
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 63.7 bits (148), Expect = 3e-09
Identities = 37/117 (31%), Positives = 58/117 (49%)
Frame = +1
Query: 130 RFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLR 309
RFVK NQ ++ R ++ LRP+V P+ RY+ K+R GRGFTL+
Sbjct: 19 RFVKPVLNQAGKKKR-RRLARQRKAAASGLTPTGYLRPLVHMPSRRYNYKLRFGRGFTLQ 77
Query: 310 EIRAAGLNPVFARTIGIAVXPRXTQQVC*IIANQCSKNKGIXSASYTVPERQKGAEG 480
E++ AGL AR++G+AV R T + + ++ K S P ++ +G
Sbjct: 78 ELKVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKG 134
Score = 45.6 bits (103), Expect = 9e-04
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = +2
Query: 383 NKSVESLQINVQRIKEYXARLILFPKGKKVLKGEA-------NEXXRKLA--TQLRGPLM 535
NK ESL +NV R+K Y ++L+LFP+ K KG A E R LA Q +M
Sbjct: 102 NKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKGFAGLPSDTPREKLRTLALTKQSVKKVM 161
Query: 536 PVQQPAPKSVARPITEXE 589
PV Q K R +TE +
Sbjct: 162 PVVQEFVKEPPREVTEKD 179
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 56.4 bits (130), Expect = 5e-07
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +1
Query: 235 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVXPR 375
LRPIVRCPT++Y+ R GRGFT E AGL+ AR +GIAV R
Sbjct: 51 LRPIVRCPTIKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLR 97
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 52.4 bits (120), Expect = 8e-06
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRY-RXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGR 294
+ W+ V T FNQP + R K L+P+V+CPT ++TK++ GR
Sbjct: 14 KKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKIKLGR 73
Query: 295 GFTLREIRAAGLNPVFARTIGIAVXPR 375
GF+++EI+ + + A + GI++ R
Sbjct: 74 GFSIQEIKKSMIKLKTATSYGISIDKR 100
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 41.1 bits (92), Expect = 0.019
Identities = 23/46 (50%), Positives = 24/46 (52%)
Frame = -2
Query: 350 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 213
VRA T S V P P R L YR VG TIGR+ PA GRG
Sbjct: 398 VRARTMAITRTFNSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.9 bits (89), Expect = 0.044
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 235 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGL 330
LRP+V T++Y+ KV +GFTL E++AAG+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.10
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 241 PIVRCPTVRYHTKVRAGRGFTLREIR 318
PIV+C T++Y+ K RAGRGF L E++
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELK 72
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 38.3 bits (85), Expect = 0.13
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYR 174
+ WQR+VKTWFNQP R+ R
Sbjct: 19 KDWQRYVKTWFNQPGRKLR 37
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 35.9 bits (79), Expect = 0.71
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 238 RPIVRCPTVRYH---TKVRAGRGFTLREIRAAGLNPVFARTIGIAVXPR 375
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI V R
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDER 54
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 35.1 bits (77), Expect = 1.2
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYR 174
+ WQR V TWFNQPAR+ R
Sbjct: 16 KDWQRRVATWFNQPARKIR 34
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 32.7 bits (71), Expect = 6.6
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 280 VRAGRGFTLREIRAAGLNPVFARTIGIAVXPR 375
VR GRGF+L E+ AGL+ AR +G+ V R
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTR 54
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,903,031
Number of Sequences: 1657284
Number of extensions: 10066342
Number of successful extensions: 22101
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22076
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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