BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C23 (591 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 85 6e-18 SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 28 0.89 SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.2 >SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces pombe|chr 1|||Manual Length = 208 Score = 85.4 bits (202), Expect = 6e-18 Identities = 42/86 (48%), Positives = 54/86 (62%) Frame = +1 Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297 + WQR+VKTWFNQP R+ R +Q +RP V+ PT+RY+ KVRAGRG Sbjct: 16 KDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRG 74 Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375 FTL E++AAG++ A TIGI V R Sbjct: 75 FTLEELKAAGVSRRVASTIGIPVDHR 100 Score = 50.0 bits (114), Expect = 3e-07 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = +2 Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556 RN+S ESLQ NV+RIK Y A LI+FP K + KG+A + T + ++P+ Q A Sbjct: 102 RNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAV 160 Query: 557 KSVARPITE 583 + A+PITE Sbjct: 161 EE-AKPITE 168 >SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1283 Score = 28.3 bits (60), Expect = 0.89 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = -1 Query: 309 TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 190 T +STG+Y M + W S T C TWSY S+ Y Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258 >SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 279 Score = 25.4 bits (53), Expect = 6.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 290 VEDSLFVKLGPQD*TQYLPERLELL 364 +ED+LF +L D T Y +RLE+L Sbjct: 95 LEDALFSQLDEFDDTAYREQRLEML 119 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,199,936 Number of Sequences: 5004 Number of extensions: 41686 Number of successful extensions: 95 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 94 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 256184654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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