Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C23
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 91 5e-19
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 90 1e-18
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 29 3.7
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445 28 4.8
03_02_0098 + 5608787-5610812,5610956-5611053 27 8.5
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 27 8.5
02_04_0147 + 20194244-20195717,20195953-20195969 27 8.5
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 91.5 bits (217), Expect = 5e-19
Identities = 43/86 (50%), Positives = 55/86 (63%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+HWQ +VKTWFNQPAR+ R + LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FTL E++AAG+ FA TIGI+V R
Sbjct: 75 FTLEELKAAGIPKKFAPTIGISVDHR 100
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556
+N+S+E LQ NVQR+K Y A+L++FP + +KV G++ ATQ++G MP+ +
Sbjct: 102 KNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 161
Query: 557 KSV 565
+SV
Sbjct: 162 RSV 164
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 75 MGKGNNMIPNGHFHK 119
M K NN+IPNGHF K
Sbjct: 1 MVKHNNVIPNGHFKK 15
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/86 (48%), Positives = 55/86 (63%)
Frame = +1
Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
+HWQ +VKTWFNQPAR+ R + LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
FTL E++AAG+ +A TIGI+V R
Sbjct: 75 FTLEELKAAGIPKKYAPTIGISVDHR 100
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556
+N+S+E LQ NVQR+K Y A+L++FP + +KV G++ ATQ++G MP+ +
Sbjct: 102 KNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEK 161
Query: 557 KSV 565
+SV
Sbjct: 162 RSV 164
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 75 MGKGNNMIPNGHFHK 119
M K NN+IPNGHF K
Sbjct: 1 MVKHNNVIPNGHFKK 15
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 152 TSQLDDTAXSKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 322
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
Length = 352
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 267 PNSWASHYRT*RPSCRTWSYGLSFLYXILLXAVSSSWLVKPSF-NKSLPMPCGNVH*VSY 91
P W R + +S + L LL VS S + PS+ +++ N+ VSY
Sbjct: 152 PTRWPDFVPGYRDTVVKYSDSMKDLAQKLLRIVSESLNLPPSYIEEAVGEVYQNIT-VSY 210
Query: 90 YSPCP 76
YSPCP
Sbjct: 211 YSPCP 215
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 561 DLGAGC*TGINGPRSC---VASLRXXSLASPFSTFLPFGNSIR 442
D GAG G++G RSC V ++ ++A+P LP +IR
Sbjct: 79 DAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLGAIR 121
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 372 GXYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWA--SHYRT*RP 229
G Y + +G Y ++ GP+ T S SS + + +S A SH+R RP
Sbjct: 103 GNYYKPSLAGSYRARAPGPHATTSSSSECSSYGGFSSSEAESSHHRRLRP 152
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 246 YRT*RPSCRTWSYGLSF 196
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,748
Number of Sequences: 37544
Number of extensions: 274229
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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