Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C23
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)              93   1e-19
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              28   6.6  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                28   6.6  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 45/86 (52%), Positives = 55/86 (63%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           + WQR+VKTWF+QP R+ R +                  LRPIVRCPT +Y+TKVRAGRG
Sbjct: 16  KDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPTFKYNTKVRAGRG 75

Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
           FTL E++AAG+    A TIGIAV  R
Sbjct: 76  FTLDELKAAGIPRKVAPTIGIAVDHR 101



 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = +2

Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556
           +N+S ESLQ NVQR+KEY ++LI+FP K  K  +G++       A QL+GP+MP+ Q + 
Sbjct: 103 KNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESV 162

Query: 557 KSVARPITEXE 589
              ARPITE E
Sbjct: 163 PIKARPITEDE 173



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 81  KGNNMIPNGHFHK 119
           K NN+IPNGHFHK
Sbjct: 4   KRNNIIPNGHFHK 16


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 228 SCRTWSYGLSFLYXILLXAVSSSWLVKPSFNKSLPMPC 115
           SCRTW    SF+   +L AV S+ L+  +   S    C
Sbjct: 199 SCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWIC 236


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 228 SCRTWSYGLSFLYXILLXAVSSSWLVKPSFNKSLPMPC 115
           SCRTW    SF+   +L AV S+ L+  +   S    C
Sbjct: 137 SCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWIC 174


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -1

Query: 231 PSCR--TWSYGLSFLYXILLXAVS 166
           P+CR  TWSY ++ L+ IL  AVS
Sbjct: 304 PTCRVSTWSYNMTCLHIILHYAVS 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,405
Number of Sequences: 59808
Number of extensions: 313644
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)