Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C23
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    95   3e-20
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    76   2e-14

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 43/90 (47%), Positives = 58/90 (64%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           +HW + +KTWF+QPAR+ R +QN                LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 298 FTLREIRAAGLNPVFARTIGIAVXPRXTQQ 387
           F+L+E++AAG++   ARTIGIAV  R T +
Sbjct: 76  FSLQELKAAGISQAQARTIGIAVDVRRTNK 105



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +2

Query: 383 NKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPK 559
           NK+ E L+ N  R+KEY A+LILFP K     KG+++    K+A QLRG ++P+      
Sbjct: 104 NKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITF 163

Query: 560 SVARPITEXE 589
              R +T+ E
Sbjct: 164 DEPRQVTDAE 173


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 33/72 (45%), Positives = 45/72 (62%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           +HW + +KTWF+QPAR+ R +QN                LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 298 FTLREIRAAGLN 333
           F+L+E++AA  N
Sbjct: 76  FSLQELKAAEEN 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,747
Number of Sequences: 27780
Number of extensions: 233043
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)