BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C23 (591 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 84 8e-17 At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 84 8e-17 At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 83 1e-16 At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 70 1e-12 At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.33 At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 3.1 At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 3.1 At5g12280.1 68418.m01444 hypothetical protein 28 4.1 At4g32695.1 68417.m04654 hypothetical protein hypothetical prote... 28 5.4 >At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1) Length = 206 Score = 83.8 bits (198), Expect = 8e-17 Identities = 40/86 (46%), Positives = 52/86 (60%) Frame = +1 Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297 +HWQ +VKTWFNQPAR+ R + LRP+V T++Y+ KVR G+G Sbjct: 14 KHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKG 73 Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375 FTL E++AAG+ A TIGIAV R Sbjct: 74 FTLEELKAAGIPKKLAPTIGIAVDHR 99 Score = 52.0 bits (119), Expect = 3e-07 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Frame = +2 Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556 +N+S+E LQ NVQR+K Y +L++FP + +KV G++ ATQ++G +P+ + P Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 81 KGNNMIPNGHFHK 119 K NN+IPNGHF K Sbjct: 2 KHNNVIPNGHFKK 14 >At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1) Length = 206 Score = 83.8 bits (198), Expect = 8e-17 Identities = 40/86 (46%), Positives = 52/86 (60%) Frame = +1 Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297 +HWQ +VKTWFNQPAR+ R + LRP+V T++Y+ KVR G+G Sbjct: 14 KHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKG 73 Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375 FTL E++AAG+ A TIGIAV R Sbjct: 74 FTLEELKAAGIPKKLAPTIGIAVDHR 99 Score = 52.0 bits (119), Expect = 3e-07 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Frame = +2 Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556 +N+S+E LQ NVQR+K Y +L++FP + +KV G++ ATQ++G +P+ + P Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 81 KGNNMIPNGHFHK 119 K NN+IPNGHF K Sbjct: 2 KHNNVIPNGHFKK 14 >At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) Length = 206 Score = 83.0 bits (196), Expect = 1e-16 Identities = 39/86 (45%), Positives = 52/86 (60%) Frame = +1 Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297 +HWQ +VKTWFNQPAR+ R + LRP+V T++Y+ KVRAG+G Sbjct: 14 KHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKG 73 Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375 FTL E++ AG+ A TIGI+V R Sbjct: 74 FTLEELKVAGIPKKLAPTIGISVDHR 99 Score = 50.8 bits (116), Expect = 7e-07 Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Frame = +2 Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPV 541 +N+S+E LQ NVQR+K Y A+L++FP + ++V G++ ATQ++G MP+ Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPI 155 >At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ribosomal protein L13 (BBC1), Arabidopsis thaliana, gb:X75162 Length = 206 Score = 69.7 bits (163), Expect = 1e-12 Identities = 34/83 (40%), Positives = 48/83 (57%) Frame = +1 Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297 + W+ +VKT FNQPA + R + +RP+V T+ Y+ KVRAG+G Sbjct: 14 KKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKG 73 Query: 298 FTLREIRAAGLNPVFARTIGIAV 366 FTL E++AAG+ A TIGI+V Sbjct: 74 FTLEELKAAGIPKKLAPTIGISV 96 Score = 47.6 bits (108), Expect = 6e-06 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Frame = +2 Query: 380 RNKSVESLQINVQRIKEYXARLILFPKGKKVLK-GEANEXXRKLATQLRGPLMPVQQPAP 556 +N+S+E Q NVQR+K Y A+L++FP+ + +K G++ + ATQ++ MP+ + P Sbjct: 101 KNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMP 160 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 81 KGNNMIPNGHFHK 119 K NN+IPNGHF K Sbjct: 2 KHNNVIPNGHFKK 14 >At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus stearothermophilus}; contains Pfam profiles PF00579: tRNA synthetases class I (W and Y), PF01479: S4 domain Length = 511 Score = 31.9 bits (69), Expect = 0.33 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 Query: 350 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 216 +R GF+P A N L L W++ GH+ +G G A GR Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159 >At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens] Length = 698 Score = 28.7 bits (61), Expect = 3.1 Identities = 22/75 (29%), Positives = 33/75 (44%) Frame = -1 Query: 342 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYXILLXAVSS 163 +Y + S + T E + FS V SHY+ R SCR S S L+ +++ Sbjct: 624 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 682 Query: 162 SWLVKPSFNKSLPMP 118 +K N LP+P Sbjct: 683 DGRIKLFHNYGLPVP 697 >At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens] Length = 694 Score = 28.7 bits (61), Expect = 3.1 Identities = 22/75 (29%), Positives = 33/75 (44%) Frame = -1 Query: 342 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYXILLXAVSS 163 +Y + S + T E + FS V SHY+ R SCR S S L+ +++ Sbjct: 620 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 678 Query: 162 SWLVKPSFNKSLPMP 118 +K N LP+P Sbjct: 679 DGRIKLFHNYGLPVP 693 >At5g12280.1 68418.m01444 hypothetical protein Length = 419 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +2 Query: 389 SVESLQINVQRIKEYXARLILFPKGKKVLKGEA 487 +V+SL NV +KE + I FP K+ L+G+A Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394 >At4g32695.1 68417.m04654 hypothetical protein hypothetical protein yjbI, Bacillus subtilis, PIR2:A69844 Length = 412 Score = 27.9 bits (59), Expect = 5.4 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = +2 Query: 383 NKSVESLQI--NVQRIKEYXARLILFPKGKKVLKGEANEXXRKLA--TQLRGPL 532 NK E+L I N Q K ++ P+GKKVL E N R ++ + +R P+ Sbjct: 308 NKGCENLDIANNAQADKGLIGKMYPEPEGKKVLLCEENRGVRSVSMISNMRKPV 361 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,487,624 Number of Sequences: 28952 Number of extensions: 218787 Number of successful extensions: 450 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 441 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1171109464 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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