Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C23
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    84   8e-17
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    84   8e-17
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            83   1e-16
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    70   1e-12
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    32   0.33 
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf...    29   3.1  
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf...    29   3.1  
At5g12280.1 68418.m01444 hypothetical protein                          28   4.1  
At4g32695.1 68417.m04654 hypothetical protein hypothetical prote...    28   5.4  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 40/86 (46%), Positives = 52/86 (60%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           +HWQ +VKTWFNQPAR+ R +                  LRP+V   T++Y+ KVR G+G
Sbjct: 14  KHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKG 73

Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
           FTL E++AAG+    A TIGIAV  R
Sbjct: 74  FTLEELKAAGIPKKLAPTIGIAVDHR 99



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +2

Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556
           +N+S+E LQ NVQR+K Y  +L++FP + +KV  G++       ATQ++G  +P+ +  P
Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 81  KGNNMIPNGHFHK 119
           K NN+IPNGHF K
Sbjct: 2   KHNNVIPNGHFKK 14


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 40/86 (46%), Positives = 52/86 (60%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           +HWQ +VKTWFNQPAR+ R +                  LRP+V   T++Y+ KVR G+G
Sbjct: 14  KHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKG 73

Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
           FTL E++AAG+    A TIGIAV  R
Sbjct: 74  FTLEELKAAGIPKKLAPTIGIAVDHR 99



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +2

Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPVQQPAP 556
           +N+S+E LQ NVQR+K Y  +L++FP + +KV  G++       ATQ++G  +P+ +  P
Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 81  KGNNMIPNGHFHK 119
           K NN+IPNGHF K
Sbjct: 2   KHNNVIPNGHFKK 14


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 39/86 (45%), Positives = 52/86 (60%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           +HWQ +VKTWFNQPAR+ R +                  LRP+V   T++Y+ KVRAG+G
Sbjct: 14  KHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKG 73

Query: 298 FTLREIRAAGLNPVFARTIGIAVXPR 375
           FTL E++ AG+    A TIGI+V  R
Sbjct: 74  FTLEELKVAGIPKKLAPTIGISVDHR 99



 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = +2

Query: 380 RNKSVESLQINVQRIKEYXARLILFP-KGKKVLKGEANEXXRKLATQLRGPLMPV 541
           +N+S+E LQ NVQR+K Y A+L++FP + ++V  G++       ATQ++G  MP+
Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPI 155


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/83 (40%), Positives = 48/83 (57%)
 Frame = +1

Query: 118 RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 297
           + W+ +VKT FNQPA + R +                  +RP+V   T+ Y+ KVRAG+G
Sbjct: 14  KKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKG 73

Query: 298 FTLREIRAAGLNPVFARTIGIAV 366
           FTL E++AAG+    A TIGI+V
Sbjct: 74  FTLEELKAAGIPKKLAPTIGISV 96



 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +2

Query: 380 RNKSVESLQINVQRIKEYXARLILFPKGKKVLK-GEANEXXRKLATQLRGPLMPVQQPAP 556
           +N+S+E  Q NVQR+K Y A+L++FP+  + +K G++ +     ATQ++   MP+ +  P
Sbjct: 101 KNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMP 160



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 81  KGNNMIPNGHFHK 119
           K NN+IPNGHF K
Sbjct: 2   KHNNVIPNGHFKK 14


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 350 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 216
           +R   GF+P A      N L    L W++  GH+ +G  G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159


>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 698

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -1

Query: 342 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYXILLXAVSS 163
           +Y + S   + T  E    + FS V     SHY+  R SCR  S   S L+ +++     
Sbjct: 624 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 682

Query: 162 SWLVKPSFNKSLPMP 118
              +K   N  LP+P
Sbjct: 683 DGRIKLFHNYGLPVP 697


>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 694

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -1

Query: 342 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYXILLXAVSS 163
           +Y + S   + T  E    + FS V     SHY+  R SCR  S   S L+ +++     
Sbjct: 620 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 678

Query: 162 SWLVKPSFNKSLPMP 118
              +K   N  LP+P
Sbjct: 679 DGRIKLFHNYGLPVP 693


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 389 SVESLQINVQRIKEYXARLILFPKGKKVLKGEA 487
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


>At4g32695.1 68417.m04654 hypothetical protein hypothetical protein
           yjbI, Bacillus subtilis, PIR2:A69844
          Length = 412

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 383 NKSVESLQI--NVQRIKEYXARLILFPKGKKVLKGEANEXXRKLA--TQLRGPL 532
           NK  E+L I  N Q  K    ++   P+GKKVL  E N   R ++  + +R P+
Sbjct: 308 NKGCENLDIANNAQADKGLIGKMYPEPEGKKVLLCEENRGVRSVSMISNMRKPV 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,624
Number of Sequences: 28952
Number of extensions: 218787
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)