Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C17
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 2.5
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 5.7
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 5.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 5.7
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 7.5
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 7.5
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 7.5
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 24 9.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 9.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 24 9.9
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 24 9.9
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 24 9.9
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 24 9.9
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 24 9.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 9.9
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 182 YCHIYHRIFVTINTSRRHICLTINKSKASLLIDKKLKQFSCLKKSACYLLD 30
Y Y I ++NTS +K S+++ KK ++ +C+ +AC +L+
Sbjct: 566 YNSTYELILASLNTSEP----VPADAKFSVIVAKKFEKAACISFTACKILE 612
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 2 LSLSSHKSQYLVNNMLISLNRKTVLTFYLSIVRPCF 109
L LS K L+N+ +N+K L +L +V P F
Sbjct: 587 LELSESKLASLLNSYQSFINKKEHLYSFLQLVEPSF 622
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 14 SHKSQYLVNNMLISLNRKTVLTFYLSIVRPCFCL*SNKYVFWK 142
+ SQ+L+ N++ + N+ L L + +C+ N+YV K
Sbjct: 875 TRSSQFLLLNLIEAFNKARALRDSLDLNGKRYCIMLNQYVLSK 917
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 5.7
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 285 KNEINEXKXTLL-MIKTRTSQVDKLTEYVRSNHPYEVCEV 401
K E NE +L I T+ +++DKLT+Y+ S++ E+ E+
Sbjct: 973 KAEFNEQCKSLQETIVTKDAELDKLTKYI-SDYKTEIQEM 1011
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 297 NEXKXTLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNG 425
N LL + + ++ EY+ Y+V E+ + I+NG
Sbjct: 1017 NANLQNLLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENG 1059
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 7.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 117 YKQKQGLTIDR*KVKTV 67
+K+K G+TI + KVKT+
Sbjct: 232 FKEKSGITITKRKVKTI 248
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 294 FHFSTHK*MLFREWSLHRQQAYSSPDHDL*FFQLHHWVLSHIPPN 160
F F+T K + W + ++ + HD + L H+VL ++P N
Sbjct: 1291 FGFNT-KLSEYVNWRIALERFVINESHDSALYPLLHFVLDNLPAN 1334
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 430 GLPFFMGTDITSHTSYG*LERTYSVSLS 347
G PF+M ++ TSYG +S+ ++
Sbjct: 167 GTPFWMAPEVIQQTSYGLAADIWSLGIT 194
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.2 bits (50), Expect = 9.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 195 LHHWVLSHIPPN 160
+ HW L H PPN
Sbjct: 450 IKHWYLEHCPPN 461
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 125 CLTINKSKASLLIDKKLKQFSC 60
C + SK+SLL++K ++ SC
Sbjct: 1262 CTSALDSKSSLLLEKTIQNLSC 1283
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 353 TNRVCTLQSSIRSMRGYIGT 412
T +C ++SI SMR Y+ T
Sbjct: 66 TKSICNSKTSINSMRQYLAT 85
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 24.2 bits (50), Expect = 9.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Frame = -1
Query: 443 FQVWWITVLYGYRYNLAYFVWM 378
F++WW+ L + Y + Y+ ++
Sbjct: 334 FRIWWLKYLGPFSYLILYYFFL 355
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.2 bits (50), Expect = 9.9
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 183 VLSHIPPNICHYQHFQKTYLFDY-KQKQGLTIDR*KVKTVFLFKEISMLF 37
+LSH PPNI Y FQK YL + +K G+ + ++ + + +++ F
Sbjct: 840 LLSHYPPNII-YATFQK-YLSSFINRKFGVLLSSSFIQQLNTVENLNLSF 887
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 312 TLLMIKTRTSQVDKLTEYVRSNHPYEV 392
TL+ + + ++DKLTEYV S P E+
Sbjct: 445 TLIYLYIKLRKLDKLTEYV-SGCPTEI 470
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = -1
Query: 266 YSGNGVYTGSKLI---LHQTMTYSSSNFI 189
Y+G+ +Y GS+LI L TMT +++++
Sbjct: 1415 YTGSSIYLGSRLIMMLLFGTMTVWTTHYV 1443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,133
Number of Sequences: 5004
Number of extensions: 36912
Number of successful extensions: 90
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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