Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C17
(464 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44365| Best HMM Match : CutA1 (HMM E-Value=6.8005e-42) 82 2e-16
SB_47251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 29 1.9
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 2.5
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0) 28 3.3
SB_49342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 5.8
SB_27920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_39352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_44365| Best HMM Match : CutA1 (HMM E-Value=6.8005e-42)
Length = 149
Score = 82.2 bits (194), Expect = 2e-16
Identities = 34/89 (38%), Positives = 57/89 (64%)
Frame = +3
Query: 183 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEXKXTLLMIKTRTSQVDKLTE 362
P+ E+ + + LV KLAACV+ IP + SI+ W +I E L+++KT +
Sbjct: 50 PSMEIAKNLSTALVTKKLAACVSIIPKVLSIFFWNGKIVEDTEALMVMKTTQLMAKNVIN 109
Query: 363 YVRSNHPYEVCEVISVPIKNGNPPYLKWI 449
+++++HPY+V EV+++ IK+GN Y+KWI
Sbjct: 110 FIKTSHPYDVPEVLTLAIKDGNSEYMKWI 138
>SB_47251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 288 FSTHK*MLFREWSLHRQQAYSSPDHDL 208
+S HK M + WSLH+ +A S DH L
Sbjct: 226 WSLHKMMGEKRWSLHKSRAVGSRDHSL 252
>SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 221 QTMTYSSSN--FIIGYCHIYHRIFVTINTSRRHICLTI 114
QTM + N F+I H+Y RIF ++NT +C+ +
Sbjct: 113 QTMALVALNRYFLIVRPHLYRRIFTSVNTKVMIVCVWV 150
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 200 SNFIIGYCHIYHRIFVTINTSRRHICLTINKS 105
++F++ YCH H T+ R H C +I K+
Sbjct: 120 ADFVVKYCHDCHDKIHTMEVFRGHRCTSIEKN 151
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 267 TSIYEWKNEINEXKXTLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGN 428
T++ W+ + T++M+ T TEY + HP V+ P+ N N
Sbjct: 1367 TTVEFWRMVMQYKAGTIVMLNTLEETGQTYTEYWPTEHPEIYGSVLVEPLSNDN 1420
>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1317
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 SIYEWKNEINEXKXTLL-MIKTRTSQVDKLTEYVRSNH 380
+I EWK+ INE LL +I+TRT ++ E + H
Sbjct: 840 TIAEWKDGINESWADLLELIETRTKMLEAALELHKYYH 877
>SB_49342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 452 SNPFQVWWITVLYGYRYNLAY 390
S P+ VW + + Y Y+ NL Y
Sbjct: 85 SEPYMVWTLVLSYAYKNNLKY 105
>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 795
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -1
Query: 218 TMTYSSSNFII---GYCHIYHRIFVTINTSRRHICLTINKSKASLLIDKKLK 72
T+ + NF+I C Y RIF+T + I LTI + K+LK
Sbjct: 172 TLFVTVMNFLIPAVAICIAYFRIFLTARHQAKQIKLTIKGKTHRFFLTKELK 223
>SB_27920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 261 GITSIYEWKNEINEXKXTLLMIKTRTSQVDKL 356
G + W+ ++NE + T++M K R S K+
Sbjct: 154 GPCTYVRWQTDVNEYQSTMIMSKNRLSPEKKM 185
>SB_39352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 91 NSEALLLFIVKQICLLEVLIVTNIRWY 171
NSEALL +++CL++ + I WY
Sbjct: 30 NSEALLAMEGREVCLIKRSLDEGIAWY 56
>SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 158 FVTINTSRRHICLTINKSKASLLIDKKLKQFSCLKK 51
F+ + R +CLT + K DKKL C KK
Sbjct: 17 FLRNRATSRSLCLTKTRGKILEQFDKKLAPTGCTKK 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,248
Number of Sequences: 59808
Number of extensions: 264022
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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