Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C17
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.53 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 43  HADFFKQENCFNFLSINSEALLLFIVKQIC 132
           HA F K  N    L I   A L  I  ++C
Sbjct: 110 HASFLKHSNIVKVLMIEQGASLSLITMELC 139


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +1

Query: 85  SINSEALLLFIVKQICLLE 141
           +INS+  ++ I+K++C+L+
Sbjct: 22  TINSKKTIMRILKEVCVLQ 40


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +1

Query: 85  SINSEALLLFIVKQICLLE 141
           +INS+  ++ I+K++C+L+
Sbjct: 5   TINSKKTIMRILKEVCVLQ 23


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -3

Query: 204 FFQLHHWVLSHIPPNICHYQH 142
           FF  H W +    P+ C  +H
Sbjct: 506 FFSFHQWGILVYEPSACRPRH 526


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 252 SLHRQQAYSSPDHDL*FFQLHHW 184
           SL RQ    SPD  L   ++++W
Sbjct: 511 SLIRQSIIESPDKQLTLNEIYNW 533


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 153 HYQHFQKTYLFDYKQKQGLTIDR*KVKTVF 64
           HYQH+  T +F  KQK+        ++T+F
Sbjct: 7   HYQHYHITPVFT-KQKKVKEDTELNLQTIF 35


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 179 CHIYHRIFVTINTSRRH 129
           C + H++F T+N+   H
Sbjct: 404 CALCHKVFRTLNSLNNH 420


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 137 RRHICLTINKSKASLLIDKKLKQFSCLKKSACYLLDIDFYD*RER 3
           R H+  T+  + + LL+       S LK    +LL   +YD R R
Sbjct: 130 RTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLR 174


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 179 CHIYHRIFVTINTSRRH 129
           C+I  R++ ++N+ R H
Sbjct: 35  CNICKRVYSSLNSLRNH 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,581
Number of Sequences: 438
Number of extensions: 2451
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)