Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C17
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33740.2 68415.m04137 copper-binding protein (CUTA) identical...   103   4e-23
At2g33740.1 68415.m04136 copper-binding protein (CUTA) identical...    83   1e-16
At1g12300.1 68414.m01422 pentatricopeptide (PPR) repeat-containi...    30   0.89 
At5g39440.1 68418.m04777 Snf1-related protein kinase, putative s...    27   8.3  

>At2g33740.2 68415.m04137 copper-binding protein (CUTA) identical to
           copper-binding protein CUTA GI:12963361 from
           [Arabidopsis thaliana]; contains Pfam profile: PF03091
           CutA1 divalent ion tolerance protein
          Length = 182

 Score =  103 bits (248), Expect = 4e-23
 Identities = 43/89 (48%), Positives = 64/89 (71%)
 Frame = +3

Query: 183 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEXKXTLLMIKTRTSQVDKLTE 362
           PN E G+ + + +V+ KLAACVN +PGI S+YEW+ ++      LL+IKTR S ++ LTE
Sbjct: 88  PNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTE 147

Query: 363 YVRSNHPYEVCEVISVPIKNGNPPYLKWI 449
           +V +NH Y+V EVI++PI  G+  YL+W+
Sbjct: 148 HVNANHEYDVPEVIALPITGGSDKYLEWL 176


>At2g33740.1 68415.m04136 copper-binding protein (CUTA) identical to
           copper-binding protein CUTA GI:12963361 from
           [Arabidopsis thaliana]; contains Pfam profile: PF03091
           CutA1 divalent ion tolerance protein
          Length = 156

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 34/69 (49%), Positives = 49/69 (71%)
 Frame = +3

Query: 183 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEXKXTLLMIKTRTSQVDKLTE 362
           PN E G+ + + +V+ KLAACVN +PGI S+YEW+ ++      LL+IKTR S ++ LTE
Sbjct: 88  PNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTE 147

Query: 363 YVRSNHPYE 389
           +V +NH YE
Sbjct: 148 HVNANHEYE 156


>At1g12300.1 68414.m01422 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 637

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 155 VTINTSRRHICLTINKSKASLLIDKKLKQFSCLKKSACY 39
           +TINT    +CL+  +++A LLID K+ ++ C   +  Y
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLID-KMVEYGCQPNAVTY 231


>At5g39440.1 68418.m04777 Snf1-related protein kinase, putative
           similar to SNF1-related protein kinase KIN10 (EC
           2.7.1.-) (AKIN10) [Arabidopsis thaliana]
           SWISS-PROT:Q38997
          Length = 494

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 183 PNDEVGRTIGHG-LVKNKLAACVNSIPGITSIYEWKNEINEXKXTLLMIKTRTSQVDKLT 359
           PN  +G+T+GHG   K KLA  V +   +         +N  K   + I+ +  +  K+ 
Sbjct: 17  PNYRIGKTLGHGSFAKVKLALHVATGHKVAI-----KILNRSKIKNMGIEIKVQREIKIL 71

Query: 360 EYVRSNHPYEVCEVISVP 413
            ++   H     EVI  P
Sbjct: 72  RFLMHPHIIRQYEVIETP 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,495,659
Number of Sequences: 28952
Number of extensions: 179329
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)