SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C14
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...   209   5e-53
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...   198   1e-49
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...   180   3e-44
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...   170   3e-41
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   164   1e-39
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...   161   1e-38
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...   160   2e-38
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...   157   3e-37
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...   156   5e-37
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...   152   6e-36
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...   152   6e-36
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   149   4e-35
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...   148   1e-34
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...   148   1e-34
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   136   3e-31
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...   134   1e-30
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...   134   1e-30
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...   133   4e-30
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...   131   1e-29
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...   129   7e-29
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...   128   2e-28
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...   124   2e-27
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...   121   2e-26
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...   116   4e-25
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...   116   6e-25
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...   116   6e-25
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...   116   6e-25
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...   116   6e-25
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...   111   2e-23
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...   109   7e-23
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...   102   6e-21
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...    99   8e-20
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...    99   8e-20
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...    93   5e-18
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...    91   2e-17
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...    86   6e-16
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI...    85   2e-15
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa...    80   5e-14
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym...    79   1e-13
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    73   8e-12
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti...    70   4e-11
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...    69   7e-11
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...    69   1e-10
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    68   2e-10
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    68   2e-10
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver...    64   3e-09
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...    63   5e-09
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    62   1e-08
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...    60   3e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...    60   5e-08
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...    60   5e-08
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...    59   1e-07
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...    58   1e-07
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...    58   2e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...    57   4e-07
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...    57   4e-07
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...    56   6e-07
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...    56   6e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...    55   2e-06
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...    54   4e-06
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...    53   5e-06
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My...    52   9e-06
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...    52   1e-05
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...    52   1e-05
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    52   2e-05
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...    52   2e-05
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    50   4e-05
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    50   5e-05
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...    49   1e-04
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    45   0.001
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach...    45   0.001
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    45   0.002
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...    44   0.002
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    44   0.003
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    43   0.007
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    42   0.010
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    42   0.010
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    41   0.022
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    41   0.030
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...    41   0.030
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    40   0.039
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    40   0.052
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    40   0.068
UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2; Ya...    40   0.068
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=...    39   0.090
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym...    39   0.12 
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...    38   0.28 
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    38   0.28 
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    38   0.28 
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu...    37   0.36 
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    36   0.64 
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R...    36   0.84 
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    35   1.5  
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre...    34   2.6  
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    34   3.4  
UniRef50_Q6PW10 Cluster: Cytochrome oxidase subunit I; n=1; Boha...    33   4.5  
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    33   5.9  
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    33   5.9  
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    33   7.8  
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ...    33   7.8  

>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score =  209 bits (510), Expect = 5e-53
 Identities = 117/215 (54%), Positives = 124/215 (57%)
 Frame = +1

Query: 4   RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAX 183
           RK +YSTNHKDIGTLY                   AELG PGSLIGDDQIYNTIVTAHA 
Sbjct: 1   RKWLYSTNHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAF 60

Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAG 363
                           N LVPL+L APD+AFPR+NN+ F              IV NGAG
Sbjct: 61  IMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAG 120

Query: 364 TG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 543
           TG TVYPPLSSNIAH G SV LAIFSLHL GISS                   SFDQ+PL
Sbjct: 121 TGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPL 180

Query: 544 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           FV AVGITAF         AGAIT+LLTDRNL TS
Sbjct: 181 FVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTS 215


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score =  198 bits (482), Expect = 1e-49
 Identities = 109/202 (53%), Positives = 128/202 (63%)
 Frame = -1

Query: 647 DVXKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXX 468
           +V KFRSV +IVIAPA TGS++N+K AV  T  TN G  S  I  +R             
Sbjct: 17  EVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPK 76

Query: 467 IDEIPXKCSEKIARXTDLPLCAILDESGG*TVHPVPAPFXTIXLEINNIREGGRSQNLIL 288
           I+E P KC+EKI   TD P CAI   SGG TVHPVP P  TI L  + ++EGG +QNL+L
Sbjct: 77  IEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLML 136

Query: 287 FIRGNAISGAXSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSA 108
           FIRGNA+SGA ++ GTNQFPNPP            KA AVT+ L I S PI  PG PNSA
Sbjct: 137 FIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCPNSA 195

Query: 107 RIKSLKDVPIIPDQIPKIKYNV 42
           RIKSL DVP +P   PK+KYNV
Sbjct: 196 RIKSLSDVPTMPAHAPKMKYNV 217


>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score =  180 bits (438), Expect = 3e-44
 Identities = 99/179 (55%), Positives = 107/179 (59%)
 Frame = +1

Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
           ELG PGSLIGDDQIYNTIVTAHA                 N L+PL+L APD+AFPR+NN
Sbjct: 13  ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72

Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
           + F              IV NGAGTG TVYPPLSSNIAH G SV LAIFSLHL GISS  
Sbjct: 73  MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132

Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
                            SFDQ+PLF+ AVGITA          AGAIT+LLTDRNL TS
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTS 191


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =  170 bits (413), Expect = 3e-41
 Identities = 98/212 (46%), Positives = 112/212 (52%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           ++STNHKDIGTLY                   AELG PG+L+GDDQIYN IVTAHA    
Sbjct: 8   LFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMI 67

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N LVPL++ APD+AFPR+NN+ F               V  GAGTG 
Sbjct: 68  FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGW 127

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           TVYPPL+ N+AH G SV LAIFSLHL GISS                   S  Q PLFV 
Sbjct: 128 TVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVW 187

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           +V ITA          A  IT+LLTDRNL T+
Sbjct: 188 SVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 219


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  164 bits (399), Expect = 1e-39
 Identities = 94/211 (44%), Positives = 108/211 (51%)
 Frame = +1

Query: 16  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
           +STNHKDIGTLY                   AEL  PG+L+GDDQIYN IVTAHA     
Sbjct: 8   FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N LVPL++ APD+AFPR+NN+ F               V  GAGTG T
Sbjct: 68  FMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
           VYPPL+ N+AH G SV L IFSLHL G+SS                   S  Q PLFV A
Sbjct: 128 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWA 187

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +TA          A  IT+LLTDRNL T+
Sbjct: 188 VLVTAVLLLLSLPVLAAGITMLLTDRNLNTT 218


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =  161 bits (392), Expect = 1e-38
 Identities = 92/211 (43%), Positives = 108/211 (51%)
 Frame = +1

Query: 16  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
           +STNHKDIGTLY                   AEL  PG+L+GDDQIYN IVTAHA     
Sbjct: 8   FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N LVPL++ APD+AFPR+NN+ F               V  GAGTG T
Sbjct: 68  FMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
           VYPPL+ N+AH G SV L IFSLHL G+SS                   +  Q PLFV +
Sbjct: 128 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWS 187

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +TA          A  IT+LLTDRNL T+
Sbjct: 188 VLVTAVLLLLSLPVLAAGITMLLTDRNLNTT 218


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =  160 bits (389), Expect = 2e-38
 Identities = 91/212 (42%), Positives = 109/212 (51%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           ++STNHKDIGTLY                   AELG PG+L+G+D IYN IVTAHA    
Sbjct: 7   LFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMI 66

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N LVPL++ APD+AFPR+NN+ F              +V  GAGTG 
Sbjct: 67  FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGW 126

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           TVYPPL+ N +H G SV L IFSLHL G+SS                   +  Q PLFV 
Sbjct: 127 TVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVW 186

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           +V ITA          A  IT+LLTDRNL T+
Sbjct: 187 SVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 218


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score =  157 bits (380), Expect = 3e-37
 Identities = 91/207 (43%), Positives = 104/207 (50%)
 Frame = +1

Query: 28  HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 207
           HKDIGTLY                   AEL  PG+L+GDDQIYN IVTAHA         
Sbjct: 1   HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60

Query: 208 XXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPP 387
                   N L+PL++ APD+AFPR+NN+ F               +  GAGTG TVYPP
Sbjct: 61  PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120

Query: 388 LSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 567
           L+ N+AH G SV L IFSLHL GISS                   S  Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180

Query: 568 AFXXXXXXXXXAGAITILLTDRNLXTS 648
           A          A  IT+LLTDRNL T+
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTT 207


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score =  156 bits (378), Expect = 5e-37
 Identities = 87/211 (41%), Positives = 107/211 (50%)
 Frame = +1

Query: 16  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
           +S NHKDIG+LY                    EL +PGS++GDD +YN IVTAHA     
Sbjct: 9   FSCNHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIF 68

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N  VPL++ APD+AFPR+NNI F              +V  GAGTG T
Sbjct: 69  FLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWT 128

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
           VYPPL+S  AH G SV +AIFSLHL G+SS                   +  ++PLFV +
Sbjct: 129 VYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWS 188

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V ITA          AGAIT+LLTDR   T+
Sbjct: 189 VLITAILLLLSLPVLAGAITMLLTDRYFNTT 219


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score =  152 bits (369), Expect = 6e-36
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVP+++ APD+AFPR+NNI F               V  GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLS   +H G SV LAIFSLHL GISS                   +  +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V A+ +TA          AGAIT+LLTDRN  TS
Sbjct: 185 VWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTS 218


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score =  152 bits (369), Expect = 6e-36
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVP+++ APD+AFPR+NNI F               V  GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLS   +H G SV LAIFSLHL GISS                   +  +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V A+ +TA          AGAIT+LLTDRN  TS
Sbjct: 185 VWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTS 218


>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score =  149 bits (362), Expect = 4e-35
 Identities = 85/214 (39%), Positives = 107/214 (50%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 186
           ++STNHKDIGTLY                    EL  PG  I  G+ Q+YN ++TAHA  
Sbjct: 8   LFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFL 67

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N  VP+++ APD+AFPR+NNI F              +V  G+GT
Sbjct: 68  MIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGT 127

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLS   +H G +V LAIFSLHL G+SS                   +  +LPLF
Sbjct: 128 GWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLF 187

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +V +TAF         AGAIT+LLTDRN  T+
Sbjct: 188 VWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTT 221


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score =  148 bits (359), Expect = 1e-34
 Identities = 83/179 (46%), Positives = 96/179 (53%)
 Frame = +1

Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
           ELG PGS IG+DQ+YN +VTAHA                 N LVPL+L APD+AFPR+NN
Sbjct: 23  ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82

Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
           + F               V +GAGTG TVYPPLS N AH G SV LAIFSLHL G+SS  
Sbjct: 83  MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142

Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
                              + + LFV +V ITA          AGAIT+LLTDRN  TS
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTS 201


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score =  148 bits (358), Expect = 1e-34
 Identities = 86/214 (40%), Positives = 108/214 (50%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           I+STNHKDIGTLY                    EL  P +  L+G+ QIYN ++TAHA  
Sbjct: 13  IFSTNHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFL 72

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVP+++ +PD+AFPR+NNI F              +V  G GT
Sbjct: 73  MIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGT 132

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLSS  +H G +V LAIFSLH+ G SS                   S  ++PLF
Sbjct: 133 GWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLF 192

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V ++ +TAF         AGAIT+LLTDRN  TS
Sbjct: 193 VWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTS 226


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  136 bits (330), Expect = 3e-31
 Identities = 77/179 (43%), Positives = 95/179 (53%)
 Frame = +1

Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
           ELG PGSLIG+DQIYN+IVT+HA                 N L+PL+L +PD++FPR+NN
Sbjct: 24  ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83

Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
           + F               +  G GTG TVYPPLS  + H G SV L IFSLHL G SS  
Sbjct: 84  MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143

Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
                            + D++ LF  +V ITA          AGAIT+LLTDRN+ TS
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTS 202


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score =  134 bits (325), Expect = 1e-30
 Identities = 83/214 (38%), Positives = 100/214 (46%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N L+PL++ A D AFPRINNI F              +V +GAGT
Sbjct: 66  MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLSS  AH G SV LAIF+LHL  ISS                   +  +LPLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V ++ ITAF         +  IT+LL DRN  TS
Sbjct: 186 VWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTS 219


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score =  134 bits (325), Expect = 1e-30
 Identities = 83/214 (38%), Positives = 100/214 (46%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N L+PL++ A D AFPRINNI F              +V +GAGT
Sbjct: 66  MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLSS  AH G SV LAIF+LHL  ISS                   +  +LPLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V ++ ITAF         +  IT+LL DRN  TS
Sbjct: 186 VWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTS 219


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score =  133 bits (321), Expect = 4e-30
 Identities = 81/214 (37%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDI  +Y                    EL  PGS  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVL 65

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N ++PL++ A D++FPRIN+I F              +V +GAGT
Sbjct: 66  MIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGT 125

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLSS  AH G SV LAIFSLHL  ISS                   S  ++PLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLF 185

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V A+ ITAF         +  IT+LL DRN  TS
Sbjct: 186 VWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTS 219


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score =  131 bits (317), Expect = 1e-29
 Identities = 80/200 (40%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVP+++ APD+AFPR+NNI F               V  GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLS   +H G SV LAIFSLHL GISS                   +  +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184

Query: 547 V*AVGITAFXXXXXXXXXAG 606
           V A+ +TA          AG
Sbjct: 185 VWAIFVTAILLLLSLPVLAG 204


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score =  129 bits (311), Expect = 7e-29
 Identities = 80/211 (37%), Positives = 95/211 (45%), Gaps = 1/211 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 195
           S+N KDIG LY                    EL  PG   I D+Q+YN+I+TAHA     
Sbjct: 9   SSNAKDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIF 68

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N L+PL L  PD+ FPR+NNI +               + NG GTG T
Sbjct: 69  FMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWT 128

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
           +YPPLS   +H G SV LAIF LHL GISS                      +L LF  A
Sbjct: 129 LYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWA 188

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V ITA          AG IT++LTDRN  TS
Sbjct: 189 VVITAVLLLLSLPVLAGGITMVLTDRNFNTS 219


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score =  128 bits (308), Expect = 2e-28
 Identities = 78/214 (36%), Positives = 99/214 (46%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDI  LY                    EL  PG   L G++Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAIL 65

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N ++PL++ A D AFPRINNI F              +V +GAGT
Sbjct: 66  MIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGT 125

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPL+S  AH G SV LAIF+LH+  ISS                   +  +LPLF
Sbjct: 126 GWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V A+ ITA          +  +T+LL DRN  TS
Sbjct: 186 VWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTS 219


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score =  124 bits (299), Expect = 2e-27
 Identities = 75/211 (35%), Positives = 94/211 (44%), Gaps = 1/211 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 195
           S+N KDI  LY                    EL  PG   I D+Q+YN+I+T+H      
Sbjct: 35  SSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIF 94

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N L+P+++  PD+AFPR+NN+ +              I+ NG GTG T
Sbjct: 95  FMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWT 154

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
           +YPPLS   +H    V L IF LHL GISS                      +L LF  A
Sbjct: 155 LYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWA 214

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V ITA          A AIT+LLTDRNL TS
Sbjct: 215 VVITAVLLLLSLPVLAAAITMLLTDRNLNTS 245


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score =  121 bits (291), Expect = 2e-26
 Identities = 76/214 (35%), Positives = 90/214 (42%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           I++TNHK IG LY                    EL  PG   L G+   YN I T H   
Sbjct: 9   IFTTNHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVL 68

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N  VP+++ APD++FPR+NN  F                  G GT
Sbjct: 69  MLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGT 128

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVYPPLSS  +H G SV L IFS HL GI S                       LPLF
Sbjct: 129 GWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLF 188

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +V +T+F         A AIT+LL DRN  TS
Sbjct: 189 VWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTS 222


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score =  116 bits (280), Expect = 4e-25
 Identities = 74/214 (34%), Positives = 94/214 (43%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           ++STN KDI  LY                    EL N GS  L G+ Q +N ++TAHA  
Sbjct: 11  LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N L+PL+L A D+AF R+NNI F              +V  GAGT
Sbjct: 71  MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G TVY PL+   +H G +V LAIFSLHL G SS                    ++ +PLF
Sbjct: 131 GWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLF 190

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
             AV  TA          A  +T+ + DRN  TS
Sbjct: 191 AWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTS 224


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score =  116 bits (278), Expect = 6e-25
 Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVPL + + D AFPRINN+ F              ++  G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G T+YPPL+S  +H G S+ +AIF+LHL G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +V ITA          A  +T+LL DRN  TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score =  116 bits (278), Expect = 6e-25
 Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVPL + + D AFPRINN+ F              ++  G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G T+YPPL+S  +H G S+ +AIF+LHL G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +V ITA          A  +T+LL DRN  TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score =  116 bits (278), Expect = 6e-25
 Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVPL + + D AFPRINN+ F              ++  G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G T+YPPL+S  +H G S+ +AIF+LHL G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +V ITA          A  +T+LL DRN  TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score =  116 bits (278), Expect = 6e-25
 Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVPL + + D AFPRINN+ F              ++  G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           G T+YPPL+S  +H G S+ +AIF+LHL G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V +V ITA          A  +T+LL DRN  TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score =  111 bits (266), Expect = 2e-23
 Identities = 74/215 (34%), Positives = 93/215 (43%), Gaps = 5/215 (2%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 195
           STN KDIGTLY                    EL  PG   I ++Q+YN+I+TAHA     
Sbjct: 37  STNAKDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIF 96

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N L+PL++  PD+AFPR+NNI F              I+  G GTG T
Sbjct: 97  FMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWT 156

Query: 376 V----YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 543
           +    YPPLS   +H G SV LAIF+LHL G+SS                      +L L
Sbjct: 157 LLKDKYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLAL 216

Query: 544 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           F        +            IT++LTDRN  TS
Sbjct: 217 F-------GWATWSSRSRYFLGITMVLTDRNFNTS 244


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score =  109 bits (261), Expect = 7e-23
 Identities = 80/230 (34%), Positives = 100/230 (43%), Gaps = 20/230 (8%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY- 156
           STNHKDIGTLY                   AEL  PG       +   D      DQ Y 
Sbjct: 33  STNHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYH 92

Query: 157 --NTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXX 330
             N ++TAH                  N  VP+++ APD+AFPR+NNI F          
Sbjct: 93  LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152

Query: 331 XXRXIV----XNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXX 498
                V     NGAGTG TVY PLS++    G +V +AI SLH+ G SS           
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211

Query: 499 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
                   +  ++PLFV +V +TAF         A AIT+LLTDRN  T+
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTT 261


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score =  102 bits (245), Expect = 6e-21
 Identities = 62/134 (46%), Positives = 71/134 (52%)
 Frame = +1

Query: 247 LILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVX 426
           L L APD  FPR  N+ F               V  GAGTG TV PPLS+NIAH G SV 
Sbjct: 4   LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63

Query: 427 LAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 606
           LAIFSLH+ G+ S                   +  ++PLFV AV ITA          AG
Sbjct: 64  LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123

Query: 607 AITILLTDRNLXTS 648
           AIT+LLTDRN+ TS
Sbjct: 124 AITMLLTDRNINTS 137


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score = 99.1 bits (236), Expect = 8e-20
 Identities = 57/127 (44%), Positives = 66/127 (51%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           + STNHKD GTL                    AELG PG+L+GDDQ  N IVTAHA    
Sbjct: 8   LXSTNHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMI 67

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N LVPL++ APD+AFPR+NN+ F               V  GAGTG 
Sbjct: 68  FXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGW 127

Query: 373 TVYPPLS 393
           TVYPPL+
Sbjct: 128 TVYPPLA 134


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score = 99.1 bits (236), Expect = 8e-20
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 2/182 (1%)
 Frame = +1

Query: 109 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPR 282
           A LG    L G  D  ++N ++T H                  N  +PL++ APD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202

Query: 283 INNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGIS 462
           +NN+ +              ++  GAG G T YPP+S+      R+V  AIF++H+ G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262

Query: 463 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLX 642
           S                   +  ++PLF  +V +TA+         AGAIT+LLTDRN  
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322

Query: 643 TS 648
           T+
Sbjct: 323 TT 324


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score = 93.1 bits (221), Expect = 5e-18
 Identities = 60/214 (28%), Positives = 83/214 (38%), Gaps = 2/214 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           I + NHK IGT Y                    EL +PG     G  Q+YN+++T H   
Sbjct: 16  INTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVL 75

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N ++PL+L AP++AFPR+N + F               +  G G+
Sbjct: 76  MIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGS 135

Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
             T YPPLS        S+   I  LH  GI S                   + DQ+ +F
Sbjct: 136 SWTFYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMF 194

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V    +T+F         AG++  LL DRN  TS
Sbjct: 195 VWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTS 228


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 1/211 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           S NHKDIGT+Y                    EL +PG  +    +Y++I+T HA      
Sbjct: 11  SVNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFF 70

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N  +PL++   D++ PR+NN+                +   G G G T+
Sbjct: 71  FVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTM 130

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*A 555
           YPPLS++    G  + LA+FSLH+ G+SS                    F  L P+ +  
Sbjct: 131 YPPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWT 190

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           +  T+          A  +T+LL DR+  TS
Sbjct: 191 LFGTSILLVTSVPVLAAGLTLLLLDRHFSTS 221


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score = 86.2 bits (204), Expect = 6e-16
 Identities = 59/212 (27%), Positives = 79/212 (37%), Gaps = 2/212 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXXXX 192
           S +HK IG  Y                    EL     G L GD Q YN ++T+H     
Sbjct: 10  SVSHKMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMV 69

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N  +P++   PD+ FPR+NN+ F              +   G G G 
Sbjct: 70  FAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGW 129

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           T+YP L     H   +    +F++HL GISS                   SF    LF+ 
Sbjct: 130 TLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIW 189

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           A  ITA          AG +T++L DRN  TS
Sbjct: 190 AALITAILLIITLPVLAGGVTLILCDRNFNTS 221


>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI2 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI2 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 533

 Score = 84.6 bits (200), Expect = 2e-15
 Identities = 52/132 (39%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N LVP+++ APD+AFPR+NNI F               V  GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 367 G*TVYPPLSSNI 402
           G TV   LS  I
Sbjct: 125 GWTVKCKLSQII 136


>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
           Watasenia scintillans|Rep: Cytochrome c oxidase subunit
           I - Watasenia scintillans (Sparkling enope)
          Length = 217

 Score = 79.8 bits (188), Expect = 5e-14
 Identities = 48/118 (40%), Positives = 58/118 (49%)
 Frame = +1

Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
           ELG PGSL+ DDQ+YN +VTAH                  N LVPL+L APD+AFPR+NN
Sbjct: 24  ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83

Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISS 465
           + F              +   G      +  PL       G SV LAIF LHL G+SS
Sbjct: 84  MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139


>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
           polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 434

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 186
           ++STNHKDIGTLY                    EL  PG+ I  G+ Q+YN ++TAHA  
Sbjct: 9   LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFL 68

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N  VP+++ +PD+AFPR+NNI F              +V  G G+
Sbjct: 69  MIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGS 128

Query: 367 G*TV 378
           G TV
Sbjct: 129 GWTV 132


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 72.5 bits (170), Expect = 8e-12
 Identities = 36/65 (55%), Positives = 42/65 (64%)
 Frame = +1

Query: 247 LILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVX 426
           L+L APD+AFPR+NN+ F              +V NGAGTG TVYPPLSS  AH G SV 
Sbjct: 1   LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60

Query: 427 LAIFS 441
           LAI+S
Sbjct: 61  LAIYS 65



 Score = 33.9 bits (74), Expect = 3.4
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 546 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLXYII 650
           CM C +Y        TCFS S+Y IIN  K  Y I
Sbjct: 97  CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFI 131


>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
           lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 457

 Score = 70.1 bits (164), Expect = 4e-11
 Identities = 45/132 (34%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           ++STN KDI  LY                    EL N GS  L G+ Q +N ++TAHA  
Sbjct: 11  LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N L+PL+L A D+AF R+NNI F              +V  GAGT
Sbjct: 71  MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130

Query: 367 G*TVYPPLSSNI 402
           G TV    SS +
Sbjct: 131 GWTVKKICSSKM 142


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score = 69.3 bits (162), Expect = 7e-11
 Identities = 59/218 (27%), Positives = 82/218 (37%), Gaps = 8/218 (3%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + +HKDIG LY                    EL +PG  +  +  YN+++T+H       
Sbjct: 91  TVDHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFL 150

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXN---GAGTG 369
                      N L+PL++ A D+AFPRIN I F                      A TG
Sbjct: 151 FATPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTG 209

Query: 370 *TVYPPLS-----SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQ 534
            T+Y PLS      N A+ G  V L +  LHL G+S+                   S+  
Sbjct: 210 WTMYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWAN 267

Query: 535 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           L +F   +   +            AI +LL DRN  TS
Sbjct: 268 LDIFSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTS 305


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 56/211 (26%), Positives = 78/211 (36%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           I S NH D+  LY                    +L  P  L  D  +YN  VT H     
Sbjct: 4   IMSVNHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMV 61

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N L+P     PD+ FPR+N + F              ++ + A  G 
Sbjct: 62  FFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLS-----LLLFSMASAGW 116

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           T YPPLSS       SV  ++FSLHL GI+S                    +  L LF  
Sbjct: 117 TFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCW 170

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
           ++ + +          A  IT++LTD++L T
Sbjct: 171 SIVLVSLLLVLSLPVLAVGITLILTDKHLGT 201


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 37/83 (44%), Positives = 46/83 (55%)
 Frame = +1

Query: 385 PLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 564
           PL+S+IAH G SV +AIFSLHL G+SS                   + D++PLF+ AV I
Sbjct: 72  PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131

Query: 565 TAFXXXXXXXXXAGAITILLTDR 633
           T           AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154



 Score = 36.7 bits (81), Expect = 0.48
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +3

Query: 219 WRIWKLIXXXXXXXXXXXIPTNK*YKILTPTPLPY 323
           W IWKLI            P NK YKILT  PL Y
Sbjct: 28  WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTY 62


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 73/208 (35%), Positives = 85/208 (40%), Gaps = 1/208 (0%)
 Frame = +1

Query: 28  HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 204
           HKD GTL +                     L   G +IG  QI    VTA A        
Sbjct: 1   HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60

Query: 205 XXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYP 384
                      L PL + AP +A PR+ N+ F               +  G G    VYP
Sbjct: 61  MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120

Query: 385 PLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 564
           P SS +AH   +V L IF LHL GISS                   ++    LF      
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180

Query: 565 TAFXXXXXXXXXAGAITILLTDRNLXTS 648
                       A AIT+L   R    S
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXS 208


>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
           Kluyveromyces thermotolerans|Rep: Putative DNA
           endonuclease - Kluyveromyces thermotolerans (Yeast)
          Length = 542

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
           +YSTN KDI  LY                    EL  PG+  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVL 65

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
                          N L+PL++ A D++F R+NNI F              +V +GAGT
Sbjct: 66  MIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGT 125

Query: 367 G*TV 378
           G TV
Sbjct: 126 GWTV 129


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 42/165 (25%), Positives = 62/165 (37%), Gaps = 1/165 (0%)
 Frame = +1

Query: 154 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXX 333
           Y  I T H                  N L+PL++ A D+AFPR+N   F           
Sbjct: 86  YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145

Query: 334 XRXIVXNG-AGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXX 510
                  G AG G T Y PLS+N+   G    L + ++ + G+SS               
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205

Query: 511 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
               ++ +LPL +  + +TA            A  +LL DR+  T
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGT 250


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 46/175 (26%), Positives = 67/175 (38%)
 Frame = +1

Query: 124 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFX 303
           PG  + D + YN ++T H                  N L+PL++ A D+AFPR+N + + 
Sbjct: 2   PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61

Query: 304 XXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXX 483
                        I  N   T  T YPP S N  +      L +F +HL G SS      
Sbjct: 62  AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119

Query: 484 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
                        +F +  LFV  +              AGA+T+L  D+ L T+
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTN 174


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score = 60.5 bits (140), Expect = 3e-08
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 6/216 (2%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXX 186
           +T+HK IG LY                    EL   G  I     +  IYN  +T H   
Sbjct: 15  TTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLI 74

Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRF-XXXXXXXXXXXXRXIVXNGAG 363
                          N L+P+++   +++ PR+N I F               ++     
Sbjct: 75  MLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPIS 134

Query: 364 TG*TVYPPLSSNIAHR-GRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
           +G T+YPPLS+  A   G ++ L++  +H+ GISS                   +F  + 
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNIN 194

Query: 541 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           ++  ++ +T+            AIT LL DRN+ ++
Sbjct: 195 IYNFSIIVTSILLIGSLPILGVAITGLLLDRNINST 230


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 46/186 (24%), Positives = 68/186 (36%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           + + +HK IG ++                    EL  PG  I D   YN + T H     
Sbjct: 30  LLTQDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMI 89

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N L+P+++ A D+AFP++N + F              +V  GA TG 
Sbjct: 90  FLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVALF-GMVQGGADTGW 148

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           T Y P S+    +   V L  F L   G SS                    + +LPLFV 
Sbjct: 149 TFYTPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVW 205

Query: 553 AVGITA 570
           ++  T+
Sbjct: 206 SIYATS 211


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 50/212 (23%), Positives = 74/212 (34%), Gaps = 1/212 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           I +T+HKDIG LY                    +L  P S       Y   VT H     
Sbjct: 16  ITTTDHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIML 75

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGA-GTG 369
                        N +VPL + A D+AFPR+N + +                 +GA   G
Sbjct: 76  LWFASPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVG 134

Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
            T+Y PL++ I   G  + LA  ++ L  +S                     + ++P+F 
Sbjct: 135 WTLYAPLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFT 194

Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
            ++  T                +LL DRNL T
Sbjct: 195 WSILFTVILMLWAFPPLMVGGALLLLDRNLGT 226


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 50/209 (23%), Positives = 75/209 (35%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           + + +HK IG ++                    EL  PG  I D   YN   T H     
Sbjct: 37  LLTVDHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMI 96

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N ++PL+L A D+AFPR+N +                ++  G  TG 
Sbjct: 97  FLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALW-GMLNGGLDTGW 155

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           T Y P S   AH   +V   +F   + G SS                   ++ ++PLFV 
Sbjct: 156 TFYTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVW 212

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNL 639
           A+  T+           G + +L+T  NL
Sbjct: 213 AIYATS-CIQVLATPVIGLLLVLVTVENL 240


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 2/212 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + +HKDIG LY                    EL      +    +YN ++T+H       
Sbjct: 65  TVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFL 124

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXN--GAGTG* 372
                      N  +PL++ A D+AFPRIN I F              ++     A T  
Sbjct: 125 FGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSW 183

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           T+Y PLS  ++    +V + +  LHL G+S+                    +  L +F  
Sbjct: 184 TMYTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSW 241

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
            +   +            A+ +LL DRN  T+
Sbjct: 242 TMLTQSGLILFAFPLFGSALIMLLLDRNFGTT 273


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score = 57.6 bits (133), Expect = 2e-07
 Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 2/213 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXX 189
           I++T+HK +G LY                    EL   G  I DD  +YNT +  H    
Sbjct: 9   IFTTDHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAM 68

Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
                         N  +PL++ A D+AFPR+N +                 + +     
Sbjct: 69  ILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIM 128

Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
            T YPP S  I H   +     FS+ L G +S                    +++L +FV
Sbjct: 129 WTGYPPYSI-ITH--GNTAFYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFV 185

Query: 550 *AVGITAFXXXXXXXXXAG-AITILLTDRNLXT 645
            A  + AF          G A+T+L  D+ + T
Sbjct: 186 WAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGT 217


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 45/207 (21%), Positives = 68/207 (32%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           I + +HK +G +Y                   A+L  P +   D   YN I T H     
Sbjct: 48  ITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMI 107

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N +VPL + A D+AFP +NN+ F              ++      G 
Sbjct: 108 IFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGW 166

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           T Y PL+SN    G      +  L + GI +                   +  ++P+F  
Sbjct: 167 TSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTW 226

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDR 633
              IT             A+ +L  DR
Sbjct: 227 TTLITMVIIVFAFPVLTVALALLSFDR 253


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 4/215 (1%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQI--YNTIVTAHAX 183
           I + NHK +G  Y                    EL +    +I  + +  YN I T H  
Sbjct: 9   ITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGI 68

Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAG 363
                           N  +P++  +P++A+PRIN+I                    G G
Sbjct: 69  IMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGG 128

Query: 364 TG*TVYPPLSSNIAHRGR-SVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
           TG T+YPPLS+++      +V + IF L + G++S                   +   L 
Sbjct: 129 TGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILS 188

Query: 541 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
           +   ++ IT+           G + +LL+D +  T
Sbjct: 189 VSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNT 223


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 46/212 (21%), Positives = 73/212 (34%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           + + +HK IG +Y                    +L  P +     +++N + T H     
Sbjct: 27  VSTLDHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMV 86

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N  VPL++ A D+AFPR+N+  F              +  +    G 
Sbjct: 87  FLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGW 145

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
             Y PLSS      + V   I  L + GI S                   S  ++PLFV 
Sbjct: 146 FSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVW 205

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
            + + A            A+ +LL DR L ++
Sbjct: 206 MMLMQAILIILALPALNSALAMLLIDRWLGSA 237


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 48/212 (22%), Positives = 75/212 (35%), Gaps = 3/212 (1%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDD--QIYNTIVTAHAXXX 189
           S NHK IG  Y                    EL   G  +I  D  +IYN + T H    
Sbjct: 14  SGNHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIM 73

Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
                         N L P++L   D+ +PR+N                   +  G+GTG
Sbjct: 74  VFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTG 133

Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
            T+YPPLS+++++ G  +   IF L   GI+S                     D++    
Sbjct: 134 WTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAA 191

Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
            ++ +T+F              ++  DR+  T
Sbjct: 192 WSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNT 223


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 46/208 (22%), Positives = 71/208 (34%), Gaps = 1/208 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           +T+HK +G +Y                   AEL  PG     ++ +N + T H       
Sbjct: 35  TTDHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLL 94

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT-G*T 375
                      N ++PL + APD+AFPR+N   F              +   GA   G T
Sbjct: 95  YGTPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWT 153

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
           +Y PLS  I   G    + I  +   GI S                   +  ++P+F   
Sbjct: 154 MYSPLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWN 213

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNL 639
           + + +            A   +L DR L
Sbjct: 214 IFVVSVLALLIFPLLLAAALGVLYDRKL 241


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 54/210 (25%), Positives = 74/210 (35%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           S +HK IG LY                     L +P   +    +YN +VT H       
Sbjct: 107 SLDHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFF 166

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N  +P+ L   D+  PR+N++                 +  G G G T+
Sbjct: 167 FLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELS--LYYGCGIGWTL 224

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
           YPPLS      G  V   +FSLHL G+SS                   SF+   + V A 
Sbjct: 225 YPPLSI-WEGSGFGVDYLMFSLHLAGVSS----LIGSVNFISTIFSRLSFN-CSIIVWAY 278

Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXTS 648
             T+          A  IT+LL DRN  T+
Sbjct: 279 LFTSVLLLLSLPVLASGITMLLFDRNFGTA 308


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 46/209 (22%), Positives = 69/209 (33%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           +T+HK IG +Y                    +LG P +      +YN + T H       
Sbjct: 28  TTDHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFL 87

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N +VPL++ A D+AFPR+N +                 V      G   
Sbjct: 88  GLMPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFA 146

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
           Y PL+         V   I  + L G++S                   + +++PLFV   
Sbjct: 147 YAPLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQ 206

Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXT 645
            + AF           A   LL DR+  T
Sbjct: 207 LVVAFILIFAFPVLTVATIQLLFDRHFGT 235


>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
           Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
           subunit I - Myrmarachne sp. G FSC-2006
          Length = 129

 Score = 52.4 bits (120), Expect = 9e-06
 Identities = 25/41 (60%), Positives = 28/41 (68%)
 Frame = +1

Query: 343 IVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISS 465
           +V  G G G TVYPPL+S + H G SV  AIFSLHL G SS
Sbjct: 12  MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 49/214 (22%), Positives = 73/214 (34%), Gaps = 3/214 (1%)
 Frame = +1

Query: 16  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
           ++T+ K IG  Y                    EL  P + + D  +YN + T H      
Sbjct: 32  FNTDAKVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLF 91

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNG-AGTG* 372
                       N L+P ++ APD+AFP++N   F                  G A +G 
Sbjct: 92  LFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGW 150

Query: 373 TVYPPLS--SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
             YPP+S  + + H      L I ++ L GISS                    F ++P+F
Sbjct: 151 WSYPPMSLQNPLGHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVF 210

Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V                  G   +LL D +  TS
Sbjct: 211 VWTAWAAQTIQLIGLPALTGGAVMLLFDLSFGTS 244


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 1/208 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXX 189
           ++ST+H D+G LY                   AEL  PG+  I D   +N + T H    
Sbjct: 15  MFSTHHTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHG-TT 73

Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
                         N  VP+++   D+A+P++N I F                 +   T 
Sbjct: 74  LIFLFILPFASAVGNYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT- 132

Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
               PP S  I+  G +  + IF L + GISS                   S  Q+PL  
Sbjct: 133 ----PPYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLA 187

Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDR 633
            +   ++          A A+ +LLTDR
Sbjct: 188 WSYLSSSLIVLVALPTFAAALLMLLTDR 215


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 51/211 (24%), Positives = 68/211 (32%)
 Frame = +1

Query: 16  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
           +  +HK IG  Y                    EL  P       ++YN ++T H      
Sbjct: 23  FCVDHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIF 82

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                       N L+PL++   D+AFPR+N + F               V      G T
Sbjct: 83  LWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWT 140

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
            YPPLS      G    L I SL L G SS                       +PLF  A
Sbjct: 141 SYPPLSLLSGKWGEE--LWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWA 198

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           +  T+          A A+ +L  D    TS
Sbjct: 199 MLATSSLILLSTPVLASALILLSFDLIAGTS 229


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 1/211 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + +HK IG +Y                    +L  P +     + YN I+T H       
Sbjct: 21  TVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFF 80

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGA-GTG*T 375
                      N +VPL+L A D+A PR+N   +                  GA   G T
Sbjct: 81  FIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT 140

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
            Y P S   A     V   + ++ L G SS                   S  ++P++V +
Sbjct: 141 FYYPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWS 197

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           V   +            A  ++L +R +  S
Sbjct: 198 VFAASVLNLFSLAGLTAATLLVLLERKIGLS 228


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 4/170 (2%)
 Frame = +1

Query: 148 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXX 327
           + Y  +VT HA                 N L+PL++ A D+AFP +N + +         
Sbjct: 86  EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145

Query: 328 XXXRXIV-XNGAGTG*TVYPPLS---SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXX 495
                    +GA  G T YPPLS   ++    G +  L +  +   G+SS          
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205

Query: 496 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
                    +  +LPL + A+ ITA            A  ++L DR + T
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGT 255


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 45/212 (21%), Positives = 71/212 (33%), Gaps = 2/212 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           +TNHKDIG LY                    EL + G+ +     YN  V+ H       
Sbjct: 19  TTNHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFW 78

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N LVPL + A D+AFPR+N + +                      G T+
Sbjct: 79  FISPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTM 137

Query: 379 YPPLS--SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
           Y PL+  + I   G      + +L +   +                        +P+F  
Sbjct: 138 YAPLNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSL 197

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           ++ +T +           A+ IL +D  L T+
Sbjct: 198 SINLTVWMMLFAFAALLAALMILASDHILGTT 229


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 48/210 (22%), Positives = 70/210 (33%), Gaps = 1/210 (0%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXX 195
           + +HK IG  Y                    +L  P +  IG D+ YN I T H      
Sbjct: 26  TVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMF 84

Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
                         LVPL++    IAFPR+N   +               V  G   G  
Sbjct: 85  LFAVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWF 143

Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
            Y PLS      G+   +    +    +S+                   S D++PLFV +
Sbjct: 144 AYVPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWS 203

Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXT 645
           + +T+F           A T L+ DR + T
Sbjct: 204 MLVTSFLVILAMPAIMIASTSLILDRLVGT 233


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 4/173 (2%)
 Frame = +1

Query: 142 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXX 321
           + + Y  +VT H                  N L+PL + A D+A   +N + +       
Sbjct: 98  EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157

Query: 322 XXXXXRXIVXNGAGTG*-TVYPPLSS---NIAHRGRSVXLAIFSLHLXGISSXXXXXXXX 489
                   +  G  +G   +YPPLS+    ++  G  + + + S+ L  IS         
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217

Query: 490 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
                      SF +LPL + A  ITA            A  +L+ DR+L TS
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTS 270


>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
           Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
           I - Pachymerium ferrugineum
          Length = 219

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 33/123 (26%), Positives = 40/123 (32%)
 Frame = +3

Query: 276 PTNK*YKILTPTPLPYIINFKXNCXKWCRNRMNSLPPTFI*YRT*RKIRXSCYFFTTFXX 455
           P NK +KIL  TPL Y  N    C K C + +NSLP     Y T    R   +F  T   
Sbjct: 79  PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138

Query: 456 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 635
                                         CM   +YS      +     S+YNI    K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198

Query: 636 LXY 644
             Y
Sbjct: 199 PKY 201


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = +1

Query: 4   RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAH 177
           +K +Y+ NHK I   Y                    EL +P S    GD   Y  +VTAH
Sbjct: 52  KKYVYTINHKRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAH 111

Query: 178 AXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRF 300
                             N L+P  + + D+A+PR+N+I F
Sbjct: 112 GLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 47/210 (22%), Positives = 67/210 (31%), Gaps = 3/210 (1%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIG--DDQIYNTIVTAHAXXX 189
           S +HK IG +Y                    +L    G   G    + Y+ I TAH    
Sbjct: 52  SVDHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTAHGVIM 111

Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
                         N +VPL + A D+AFP +N++ F               V N A TG
Sbjct: 112 IIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTG 170

Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
              YPPL+         V   I++L + GI +                       +P+F 
Sbjct: 171 WVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFT 230

Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDRNL 639
                             GA+ +L  DR L
Sbjct: 231 WTCTWANVLIATSFPILTGALAMLALDRYL 260


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 36/184 (19%), Positives = 60/184 (32%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + NH D+G ++                   A+L  P S     + YN + T H       
Sbjct: 26  TVNHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFL 85

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                        L+P +L + D+AFPR+    F              +      +G  +
Sbjct: 86  FAIPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFM 144

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
           YPPLSS +   G +    +  +    IS+                   S  ++P+F    
Sbjct: 145 YPPLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYA 204

Query: 559 GITA 570
            +TA
Sbjct: 205 LVTA 208


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 42.7 bits (96), Expect = 0.007
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 549 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLXYII 650
           M C +YS      +TC  WSYYN IN SKL YI+
Sbjct: 84  MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYIL 117


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 48/217 (22%), Positives = 72/217 (33%), Gaps = 5/217 (2%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSL-IGDDQIYNTIVTAHAXXX 189
           ++S + K I   Y                    +LG PG+    D   Y   +T H    
Sbjct: 33  VFSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIM 92

Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNG-AGT 366
                         N L+PL++ A D+ FP +N + +               V  G  G 
Sbjct: 93  VIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGA 152

Query: 367 G*TVYPP--LSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
           G T+YPP  + S    +   + L + SL L  I                     +  +LP
Sbjct: 153 GWTLYPPQAILSGTPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLP 212

Query: 541 LFV*AV-GITAFXXXXXXXXXAGAITILLTDRNLXTS 648
           L V  +   T            G++ +LL DR L TS
Sbjct: 213 LTVWGIFTATVMALLAFPALFVGSVMLLL-DRLLGTS 248


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 37/210 (17%), Positives = 67/210 (31%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + +HK I  LY                    +L  P +     Q YN ++T H       
Sbjct: 21  TVDHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N +VPL + A D++FP +N + F               +      G T 
Sbjct: 81  AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
           Y  LS  +  +G  +   +  L + G+ +                   ++ +LPLF    
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTT 197

Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXTS 648
            + +             + +++ DR   T+
Sbjct: 198 FVASALILFAFPPLTVGLALMMLDRLFGTN 227


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 41.1 bits (92), Expect = 0.022
 Identities = 46/212 (21%), Positives = 67/212 (31%), Gaps = 5/212 (2%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAEL-----GNPGSLIGDDQIYNTIVTAHAX 183
           + +HK IG +Y                    +L     G+ G L    + Y+ I TAH  
Sbjct: 51  TVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGV 108

Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAG 363
                           N  VPL + A D+AFP +N++ F               V   A 
Sbjct: 109 IMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAK 167

Query: 364 TG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 543
           TG   YPPL+      G  V   I++L L G+ +                       +P+
Sbjct: 168 TGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPI 227

Query: 544 FV*AVGITAFXXXXXXXXXAGAITILLTDRNL 639
           F                    A+ +L  DR L
Sbjct: 228 FTWTCTWANVLIVASFPILTAALALLTVDRYL 259


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 40.7 bits (91), Expect = 0.030
 Identities = 31/176 (17%), Positives = 59/176 (33%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + NH D+G ++                   A+L +P S     + Y  + T H       
Sbjct: 26  TVNHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFL 85

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                        L+P +L + D+A+PR++   F              +      +G  +
Sbjct: 86  FAIPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFM 144

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
           YPPL+S +   G +    +  +    IS+                   S D++P++
Sbjct: 145 YPPLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIY 200


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score = 40.7 bits (91), Expect = 0.030
 Identities = 46/213 (21%), Positives = 72/213 (33%), Gaps = 6/213 (2%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGN--PGSLIGD---DQIYNTIVTAHAX 183
           +TN   IG LY                     + N  PGS + D   + +Y   ++ H  
Sbjct: 11  TTNAHYIGILYILLSIINFVLAGIAAMYMRLTIANTPPGSPVQDPFNELLYTWFMSLHGL 70

Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIV-XNGA 360
                           N LVP ++ APD+ +PRIN + F              +   +G 
Sbjct: 71  GMLLLFAMQAVAGAA-NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGD 129

Query: 361 GTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
             G T+YPPLS+    +   V L +  + + G SS                       + 
Sbjct: 130 SIGWTLYPPLST--ISKSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMS 187

Query: 541 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 639
           LF  +V   +          A    +LL +R+L
Sbjct: 188 LFAWSVLAASMLMVTALPPLAAGAIMLLLERHL 220


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 40.3 bits (90), Expect = 0.039
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 2/151 (1%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAE--LGNPGSLIGDDQIYNTIVTAHAXXXX 192
           ST+HK IG +Y                   A+  +G  G  +  D  +  + + H     
Sbjct: 73  STDHKKIGIMYVVLALVMLTRAIAEAVLMRAQGAVGLGGGFLSSDH-FAQLFSTHGTIMI 131

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
                        N +VPL + A D+AFP +N+I                +V   +  G 
Sbjct: 132 FFMAMPFLTGLI-NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGW 190

Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISS 465
             YPP +  + + G  V   I+SL L  + S
Sbjct: 191 FGYPPYTETLYNPGIGVDYWIWSLTLASLGS 221


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 39.9 bits (89), Expect = 0.052
 Identities = 33/146 (22%), Positives = 46/146 (31%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           +T+HK IG LY                    +L  P   +     YN ++T HA      
Sbjct: 29  TTDHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFF 88

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N  +PL L   D+A PR+N                          G T 
Sbjct: 89  FLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTF 148

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXG 456
           Y PL+ +    G SV +    L+  G
Sbjct: 149 YYPLTMDGNQTGVSVFMVAVILNGLG 174


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 39.5 bits (88), Expect = 0.068
 Identities = 41/209 (19%), Positives = 66/209 (31%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + +HK IG  Y                    +L  P + +     Y+++ T H       
Sbjct: 46  TVDHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFL 105

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                      N L PL+L + D+AFPR+    +               +      G   
Sbjct: 106 YALPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFN 164

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
           Y PL+S     G ++ +    + L GIS+                   S D+LP+ V   
Sbjct: 165 YVPLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGT 224

Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXT 645
              +          + A  +L  DRN  T
Sbjct: 225 LTASVSNLVAVPSVSLAFLLLWLDRNAGT 253


>UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2;
           Yarrowia lipolytica|Rep: Cytochrome c oxidase subunit I
           - Yarrowia lipolytica (Candida lipolytica)
          Length = 399

 Score = 39.5 bits (88), Expect = 0.068
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 180
           ++STN KDI  LY                    EL N GS  L G+ Q +N ++TAHA
Sbjct: 11  LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHA 68


>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
           Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
           protein - Saccharomyces cerevisiae (Baker's yeast)
          Length = 854

 Score = 39.1 bits (87), Expect = 0.090
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 180
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V  HA
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63


>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
           polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 802

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 159
           ++STNHKDIGTLY                    EL  PG+ I  G+ Q+YN
Sbjct: 9   LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 22/92 (23%), Positives = 36/92 (39%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
           + + +HK IG +Y                    +L  PG  +   + +N + T HA    
Sbjct: 24  VATVDHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMI 83

Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRIN 288
                        N  +PL++ A D+AFPR+N
Sbjct: 84  FLGVMPLLSAFM-NYFLPLMIGARDVAFPRLN 114


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 24/106 (22%), Positives = 41/106 (38%)
 Frame = +1

Query: 232 N*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHR 411
           N ++PL + + D+AFP +N + F              I+   A TG   YPPLS      
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178

Query: 412 GRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
              V    +S+ + GI +                    F+++ +F+
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFM 224


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 46/193 (23%), Positives = 63/193 (32%), Gaps = 11/193 (5%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG------SLIG----DDQIYNT 162
           I++TNHK IG LY                    +L  P       S+      D   YN 
Sbjct: 27  IFTTNHKQIGLLYILTSLFFFIGGGVMALLMRVQLAIPRYDLVKYSIFSGRFLDALQYNQ 86

Query: 163 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRX 342
           +VT H                    L+PL + + D+ +PR+N + +              
Sbjct: 87  LVTIHGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGF 145

Query: 343 IVXNG-AGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXX 519
            +  G   TG TVY PLSS           A  ++ L GI +                  
Sbjct: 146 FLPGGNLDTGWTVYEPLSSFKFTPYLGADTAAAAVVLRGIGTIIASTEILATIFKARAKG 205

Query: 520 XSFDQLPLFV*AV 558
                LPLFV AV
Sbjct: 206 YRMMNLPLFVWAV 218


>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
           subunit I - Eutetramorium sp. BLF m1
          Length = 201

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 28/78 (35%), Positives = 36/78 (46%)
 Frame = +1

Query: 412 GRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 591
           G    L IFSL +   S                    + D++ L   ++ ITA       
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183

Query: 592 XXXAGAITILLTDRNLXT 645
              AGAIT+LLTDRN+ T
Sbjct: 184 PVLAGAITMLLTDRNMNT 201


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 3/144 (2%)
 Frame = +1

Query: 148 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXX 327
           + Y  + T HA                 N L+PL++ A D+AFP++N + +         
Sbjct: 90  EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149

Query: 328 XXXRXIVXNGAGTG*TVYP---PLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXX 498
                    G   G T YP    L+      G +    +  +   G SS           
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209

Query: 499 XXXXXXXXSFDQLPLFV*AVGITA 570
                   +F +LP+ +  + ITA
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITA 233


>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
           Maturase-like protein - Pellia epiphylla
          Length = 843

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 159
           ++STNHKDIGT Y                    EL  PG+ I  G+ Q+YN
Sbjct: 9   LFSTNHKDIGTPYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59


>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
           chain 2 - Sepia officinalis (Common cuttlefish)
          Length = 375

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 9   MNLFYKS*RYWNIIFYFWYLIRNNWNIFKTFNS 107
           M +  KS  YWNI+F+FWYLI    ++ K  NS
Sbjct: 339 MIILNKSQSYWNIMFHFWYLISFISHLAKINNS 371


>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
           precursor (DNA endonuclease I- SceIII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI3 precursor (DNA
           endonuclease I- SceIII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 403

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIV 168
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 33/174 (18%), Positives = 57/174 (32%)
 Frame = +1

Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
           +L  P +   D + YN + + H                    ++PL+L   D+ FPR+N 
Sbjct: 64  QLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRLNA 122

Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
             +              ++      G   YPPL+      G  +      +    IS+  
Sbjct: 123 FGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFMEISALV 182

Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 633
                            S +++P+FV AV + +F           A  +L  DR
Sbjct: 183 AAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDR 236


>UniRef50_Q6PW10 Cluster: Cytochrome oxidase subunit I; n=1;
           Bohadschia argus|Rep: Cytochrome oxidase subunit I -
           Bohadschia argus
          Length = 247

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +3

Query: 225 IWKLIXXXXXXXXXXXIPTNK*YKILTPTPLPYIINFKXNCXKWCRNRMNSLPPTFI*YR 404
           +W L            IP N+  ++L    L +      +  K CRNRMN+LP       
Sbjct: 28  LWNLTYTFNDSSPWYGIPPNEQNELLVSPSLFHSTPSISSSGKSCRNRMNNLPTLIQNNS 87

Query: 405 T*RKIRXSCYFFTT 446
             R +    YFF+T
Sbjct: 88  PRRSVSSPRYFFST 101


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 38/187 (20%), Positives = 58/187 (31%), Gaps = 1/187 (0%)
 Frame = +1

Query: 13  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIGDDQIYNTIVTAHAXXX 189
           I + N++ IG LY                    +L  P   L+G D  YN I T H    
Sbjct: 34  ISAVNNQVIGILYVGAAFLFFILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTM 92

Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
                           L+P +L A D+ FPR++                          G
Sbjct: 93  MFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGG 151

Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
             +YPPL+      G +    +  +    IS+                   S  ++P+F 
Sbjct: 152 WFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFA 211

Query: 550 *AVGITA 570
            A+ I A
Sbjct: 212 WAMLIFA 218


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 31/185 (16%), Positives = 58/185 (31%)
 Frame = +1

Query: 19  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
           + +H+ +G  +                    +L  P +     + YN + T H       
Sbjct: 52  AVSHRAVGKRFLITGFIFFLIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFL 111

Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
                        L+PL++ A D+ FPR+    +              +       G  +
Sbjct: 112 FAIPMLEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFM 170

Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
           Y PLS++    G S    +  + L  I+S                   S  ++P+ +  +
Sbjct: 171 YVPLSTSAYTEGLSADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYL 230

Query: 559 GITAF 573
             TAF
Sbjct: 231 LATAF 235


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = +1

Query: 118 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIR 297
           G PG ++   + Y +++T H                  N  +P+ + A D+AFPR N + 
Sbjct: 75  GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133

Query: 298 FXXXXXXXXXXXXRXIVXNGAG-TG*TVYPPLSS 396
           F               + +G   +G T Y  LS+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSA 167


>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1420

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 632  RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 510
            +++NN +I      S NNN N++  T  TN  + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,272,025
Number of Sequences: 1657284
Number of extensions: 6284604
Number of successful extensions: 14799
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 13525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14607
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -