Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C14
(650 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 209 5e-53
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 198 1e-49
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 180 3e-44
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 170 3e-41
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 164 1e-39
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 161 1e-38
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 160 2e-38
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 157 3e-37
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 156 5e-37
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 152 6e-36
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 152 6e-36
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 149 4e-35
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 148 1e-34
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 148 1e-34
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 136 3e-31
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 134 1e-30
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 134 1e-30
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 133 4e-30
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 131 1e-29
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 129 7e-29
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 128 2e-28
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 124 2e-27
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 121 2e-26
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 116 4e-25
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 116 6e-25
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 116 6e-25
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 116 6e-25
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 116 6e-25
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 111 2e-23
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 109 7e-23
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 102 6e-21
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 99 8e-20
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 99 8e-20
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 93 5e-18
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 91 2e-17
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 86 6e-16
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 85 2e-15
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 80 5e-14
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 79 1e-13
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 73 8e-12
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 70 4e-11
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 69 7e-11
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 69 1e-10
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 68 2e-10
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 68 2e-10
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 64 3e-09
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 63 5e-09
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 62 1e-08
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 60 3e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 60 5e-08
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 60 5e-08
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 59 1e-07
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 58 1e-07
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 58 2e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 57 4e-07
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 57 4e-07
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 56 6e-07
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 56 6e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 55 2e-06
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 54 4e-06
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 53 5e-06
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 52 9e-06
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 52 1e-05
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 52 1e-05
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 52 2e-05
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 52 2e-05
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 50 4e-05
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 50 5e-05
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 49 1e-04
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 45 0.001
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 45 0.001
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 45 0.002
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 44 0.002
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 44 0.003
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 43 0.007
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 42 0.010
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 42 0.010
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 41 0.022
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 41 0.030
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 41 0.030
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 40 0.039
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 40 0.052
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 40 0.068
UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2; Ya... 40 0.068
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 39 0.090
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 39 0.12
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 38 0.28
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 38 0.28
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 38 0.28
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 37 0.36
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 36 0.64
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 36 0.84
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 35 1.5
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 34 2.6
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 34 3.4
UniRef50_Q6PW10 Cluster: Cytochrome oxidase subunit I; n=1; Boha... 33 4.5
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 33 5.9
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 33 5.9
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 33 7.8
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 7.8
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 209 bits (510), Expect = 5e-53
Identities = 117/215 (54%), Positives = 124/215 (57%)
Frame = +1
Query: 4 RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAX 183
RK +YSTNHKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 1 RKWLYSTNHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAF 60
Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAG 363
N LVPL+L APD+AFPR+NN+ F IV NGAG
Sbjct: 61 IMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAG 120
Query: 364 TG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 543
TG TVYPPLSSNIAH G SV LAIFSLHL GISS SFDQ+PL
Sbjct: 121 TGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPL 180
Query: 544 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
FV AVGITAF AGAIT+LLTDRNL TS
Sbjct: 181 FVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTS 215
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 198 bits (482), Expect = 1e-49
Identities = 109/202 (53%), Positives = 128/202 (63%)
Frame = -1
Query: 647 DVXKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXX 468
+V KFRSV +IVIAPA TGS++N+K AV T TN G S I +R
Sbjct: 17 EVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPK 76
Query: 467 IDEIPXKCSEKIARXTDLPLCAILDESGG*TVHPVPAPFXTIXLEINNIREGGRSQNLIL 288
I+E P KC+EKI TD P CAI SGG TVHPVP P TI L + ++EGG +QNL+L
Sbjct: 77 IEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLML 136
Query: 287 FIRGNAISGAXSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSA 108
FIRGNA+SGA ++ GTNQFPNPP KA AVT+ L I S PI PG PNSA
Sbjct: 137 FIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCPNSA 195
Query: 107 RIKSLKDVPIIPDQIPKIKYNV 42
RIKSL DVP +P PK+KYNV
Sbjct: 196 RIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 180 bits (438), Expect = 3e-44
Identities = 99/179 (55%), Positives = 107/179 (59%)
Frame = +1
Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
ELG PGSLIGDDQIYNTIVTAHA N L+PL+L APD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
+ F IV NGAGTG TVYPPLSSNIAH G SV LAIFSLHL GISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
SFDQ+PLF+ AVGITA AGAIT+LLTDRNL TS
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTS 191
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 170 bits (413), Expect = 3e-41
Identities = 98/212 (46%), Positives = 112/212 (52%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
++STNHKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 8 LFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMI 67
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N LVPL++ APD+AFPR+NN+ F V GAGTG
Sbjct: 68 FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGW 127
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
TVYPPL+ N+AH G SV LAIFSLHL GISS S Q PLFV
Sbjct: 128 TVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVW 187
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+V ITA A IT+LLTDRNL T+
Sbjct: 188 SVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 219
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 164 bits (399), Expect = 1e-39
Identities = 94/211 (44%), Positives = 108/211 (51%)
Frame = +1
Query: 16 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
+STNHKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 8 FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N LVPL++ APD+AFPR+NN+ F V GAGTG T
Sbjct: 68 FMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
VYPPL+ N+AH G SV L IFSLHL G+SS S Q PLFV A
Sbjct: 128 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWA 187
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +TA A IT+LLTDRNL T+
Sbjct: 188 VLVTAVLLLLSLPVLAAGITMLLTDRNLNTT 218
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 161 bits (392), Expect = 1e-38
Identities = 92/211 (43%), Positives = 108/211 (51%)
Frame = +1
Query: 16 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
+STNHKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 8 FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N LVPL++ APD+AFPR+NN+ F V GAGTG T
Sbjct: 68 FMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
VYPPL+ N+AH G SV L IFSLHL G+SS + Q PLFV +
Sbjct: 128 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWS 187
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +TA A IT+LLTDRNL T+
Sbjct: 188 VLVTAVLLLLSLPVLAAGITMLLTDRNLNTT 218
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 160 bits (389), Expect = 2e-38
Identities = 91/212 (42%), Positives = 109/212 (51%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
++STNHKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 7 LFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMI 66
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N LVPL++ APD+AFPR+NN+ F +V GAGTG
Sbjct: 67 FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGW 126
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
TVYPPL+ N +H G SV L IFSLHL G+SS + Q PLFV
Sbjct: 127 TVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVW 186
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+V ITA A IT+LLTDRNL T+
Sbjct: 187 SVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 218
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 157 bits (380), Expect = 3e-37
Identities = 91/207 (43%), Positives = 104/207 (50%)
Frame = +1
Query: 28 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 207
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 208 XXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPP 387
N L+PL++ APD+AFPR+NN+ F + GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 388 LSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 567
L+ N+AH G SV L IFSLHL GISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 568 AFXXXXXXXXXAGAITILLTDRNLXTS 648
A A IT+LLTDRNL T+
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTT 207
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 156 bits (378), Expect = 5e-37
Identities = 87/211 (41%), Positives = 107/211 (50%)
Frame = +1
Query: 16 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
+S NHKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 9 FSCNHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIF 68
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N VPL++ APD+AFPR+NNI F +V GAGTG T
Sbjct: 69 FLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWT 128
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
VYPPL+S AH G SV +AIFSLHL G+SS + ++PLFV +
Sbjct: 129 VYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWS 188
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V ITA AGAIT+LLTDR T+
Sbjct: 189 VLITAILLLLSLPVLAGAITMLLTDRYFNTT 219
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 152 bits (369), Expect = 6e-36
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVP+++ APD+AFPR+NNI F V GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLS +H G SV LAIFSLHL GISS + +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V A+ +TA AGAIT+LLTDRN TS
Sbjct: 185 VWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTS 218
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 152 bits (369), Expect = 6e-36
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVP+++ APD+AFPR+NNI F V GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLS +H G SV LAIFSLHL GISS + +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V A+ +TA AGAIT+LLTDRN TS
Sbjct: 185 VWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTS 218
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 149 bits (362), Expect = 4e-35
Identities = 85/214 (39%), Positives = 107/214 (50%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 186
++STNHKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 8 LFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFL 67
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N VP+++ APD+AFPR+NNI F +V G+GT
Sbjct: 68 MIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGT 127
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLS +H G +V LAIFSLHL G+SS + +LPLF
Sbjct: 128 GWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLF 187
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +V +TAF AGAIT+LLTDRN T+
Sbjct: 188 VWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTT 221
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 148 bits (359), Expect = 1e-34
Identities = 83/179 (46%), Positives = 96/179 (53%)
Frame = +1
Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
ELG PGS IG+DQ+YN +VTAHA N LVPL+L APD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
+ F V +GAGTG TVYPPLS N AH G SV LAIFSLHL G+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ + LFV +V ITA AGAIT+LLTDRN TS
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTS 201
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 148 bits (358), Expect = 1e-34
Identities = 86/214 (40%), Positives = 108/214 (50%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
I+STNHKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 13 IFSTNHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFL 72
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVP+++ +PD+AFPR+NNI F +V G GT
Sbjct: 73 MIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGT 132
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLSS +H G +V LAIFSLH+ G SS S ++PLF
Sbjct: 133 GWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLF 192
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V ++ +TAF AGAIT+LLTDRN TS
Sbjct: 193 VWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTS 226
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 136 bits (330), Expect = 3e-31
Identities = 77/179 (43%), Positives = 95/179 (53%)
Frame = +1
Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
ELG PGSLIG+DQIYN+IVT+HA N L+PL+L +PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
+ F + G GTG TVYPPLS + H G SV L IFSLHL G SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ D++ LF +V ITA AGAIT+LLTDRN+ TS
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTS 202
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 134 bits (325), Expect = 1e-30
Identities = 83/214 (38%), Positives = 100/214 (46%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N L+PL++ A D AFPRINNI F +V +GAGT
Sbjct: 66 MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLSS AH G SV LAIF+LHL ISS + +LPLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V ++ ITAF + IT+LL DRN TS
Sbjct: 186 VWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTS 219
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 134 bits (325), Expect = 1e-30
Identities = 83/214 (38%), Positives = 100/214 (46%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N L+PL++ A D AFPRINNI F +V +GAGT
Sbjct: 66 MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLSS AH G SV LAIF+LHL ISS + +LPLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V ++ ITAF + IT+LL DRN TS
Sbjct: 186 VWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTS 219
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 133 bits (321), Expect = 4e-30
Identities = 81/214 (37%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVL 65
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N ++PL++ A D++FPRIN+I F +V +GAGT
Sbjct: 66 MIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGT 125
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLSS AH G SV LAIFSLHL ISS S ++PLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLF 185
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V A+ ITAF + IT+LL DRN TS
Sbjct: 186 VWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTS 219
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 131 bits (317), Expect = 1e-29
Identities = 80/200 (40%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVP+++ APD+AFPR+NNI F V GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLS +H G SV LAIFSLHL GISS + +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184
Query: 547 V*AVGITAFXXXXXXXXXAG 606
V A+ +TA AG
Sbjct: 185 VWAIFVTAILLLLSLPVLAG 204
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 129 bits (311), Expect = 7e-29
Identities = 80/211 (37%), Positives = 95/211 (45%), Gaps = 1/211 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 195
S+N KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 9 SSNAKDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIF 68
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N L+PL L PD+ FPR+NNI + + NG GTG T
Sbjct: 69 FMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWT 128
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
+YPPLS +H G SV LAIF LHL GISS +L LF A
Sbjct: 129 LYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWA 188
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V ITA AG IT++LTDRN TS
Sbjct: 189 VVITAVLLLLSLPVLAGGITMVLTDRNFNTS 219
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 128 bits (308), Expect = 2e-28
Identities = 78/214 (36%), Positives = 99/214 (46%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDI LY EL PG L G++Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAIL 65
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N ++PL++ A D AFPRINNI F +V +GAGT
Sbjct: 66 MIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGT 125
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPL+S AH G SV LAIF+LH+ ISS + +LPLF
Sbjct: 126 GWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V A+ ITA + +T+LL DRN TS
Sbjct: 186 VWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTS 219
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 124 bits (299), Expect = 2e-27
Identities = 75/211 (35%), Positives = 94/211 (44%), Gaps = 1/211 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 195
S+N KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 35 SSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIF 94
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N L+P+++ PD+AFPR+NN+ + I+ NG GTG T
Sbjct: 95 FMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWT 154
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
+YPPLS +H V L IF LHL GISS +L LF A
Sbjct: 155 LYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWA 214
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V ITA A AIT+LLTDRNL TS
Sbjct: 215 VVITAVLLLLSLPVLAAAITMLLTDRNLNTS 245
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 121 bits (291), Expect = 2e-26
Identities = 76/214 (35%), Positives = 90/214 (42%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
I++TNHK IG LY EL PG L G+ YN I T H
Sbjct: 9 IFTTNHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVL 68
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N VP+++ APD++FPR+NN F G GT
Sbjct: 69 MLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGT 128
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVYPPLSS +H G SV L IFS HL GI S LPLF
Sbjct: 129 GWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLF 188
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +V +T+F A AIT+LL DRN TS
Sbjct: 189 VWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTS 222
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 116 bits (280), Expect = 4e-25
Identities = 74/214 (34%), Positives = 94/214 (43%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
++STN KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 11 LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N L+PL+L A D+AF R+NNI F +V GAGT
Sbjct: 71 MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G TVY PL+ +H G +V LAIFSLHL G SS ++ +PLF
Sbjct: 131 GWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLF 190
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
AV TA A +T+ + DRN TS
Sbjct: 191 AWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTS 224
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 116 bits (278), Expect = 6e-25
Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVPL + + D AFPRINN+ F ++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G T+YPPL+S +H G S+ +AIF+LHL G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +V ITA A +T+LL DRN TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 116 bits (278), Expect = 6e-25
Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVPL + + D AFPRINN+ F ++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G T+YPPL+S +H G S+ +AIF+LHL G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +V ITA A +T+LL DRN TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 116 bits (278), Expect = 6e-25
Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVPL + + D AFPRINN+ F ++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G T+YPPL+S +H G S+ +AIF+LHL G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +V ITA A +T+LL DRN TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 116 bits (278), Expect = 6e-25
Identities = 70/214 (32%), Positives = 98/214 (45%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 186
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVPL + + D AFPRINN+ F ++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
G T+YPPL+S +H G S+ +AIF+LHL G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +V ITA A +T+LL DRN TS
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTS 236
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 111 bits (266), Expect = 2e-23
Identities = 74/215 (34%), Positives = 93/215 (43%), Gaps = 5/215 (2%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 195
STN KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 37 STNAKDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIF 96
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N L+PL++ PD+AFPR+NNI F I+ G GTG T
Sbjct: 97 FMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWT 156
Query: 376 V----YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 543
+ YPPLS +H G SV LAIF+LHL G+SS +L L
Sbjct: 157 LLKDKYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLAL 216
Query: 544 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
F + IT++LTDRN TS
Sbjct: 217 F-------GWATWSSRSRYFLGITMVLTDRNFNTS 244
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 109 bits (261), Expect = 7e-23
Identities = 80/230 (34%), Positives = 100/230 (43%), Gaps = 20/230 (8%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY- 156
STNHKDIGTLY AEL PG + D DQ Y
Sbjct: 33 STNHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYH 92
Query: 157 --NTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXX 330
N ++TAH N VP+++ APD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 331 XXRXIV----XNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXX 498
V NGAGTG TVY PLS++ G +V +AI SLH+ G SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 499 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ ++PLFV +V +TAF A AIT+LLTDRN T+
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTT 261
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 102 bits (245), Expect = 6e-21
Identities = 62/134 (46%), Positives = 71/134 (52%)
Frame = +1
Query: 247 LILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVX 426
L L APD FPR N+ F V GAGTG TV PPLS+NIAH G SV
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 427 LAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 606
LAIFSLH+ G+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 607 AITILLTDRNLXTS 648
AIT+LLTDRN+ TS
Sbjct: 124 AITMLLTDRNINTS 137
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 99.1 bits (236), Expect = 8e-20
Identities = 57/127 (44%), Positives = 66/127 (51%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
+ STNHKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 8 LXSTNHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMI 67
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N LVPL++ APD+AFPR+NN+ F V GAGTG
Sbjct: 68 FXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGW 127
Query: 373 TVYPPLS 393
TVYPPL+
Sbjct: 128 TVYPPLA 134
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 99.1 bits (236), Expect = 8e-20
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 2/182 (1%)
Frame = +1
Query: 109 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPR 282
A LG L G D ++N ++T H N +PL++ APD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 283 INNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGIS 462
+NN+ + ++ GAG G T YPP+S+ R+V AIF++H+ G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 463 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLX 642
S + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322
Query: 643 TS 648
T+
Sbjct: 323 TT 324
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 93.1 bits (221), Expect = 5e-18
Identities = 60/214 (28%), Positives = 83/214 (38%), Gaps = 2/214 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
I + NHK IGT Y EL +PG G Q+YN+++T H
Sbjct: 16 INTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVL 75
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N ++PL+L AP++AFPR+N + F + G G+
Sbjct: 76 MIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGS 135
Query: 367 G*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
T YPPLS S+ I LH GI S + DQ+ +F
Sbjct: 136 SWTFYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMF 194
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V +T+F AG++ LL DRN TS
Sbjct: 195 VWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTS 228
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 91.5 bits (217), Expect = 2e-17
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 1/211 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
S NHKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 11 SVNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFF 70
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N +PL++ D++ PR+NN+ + G G G T+
Sbjct: 71 FVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTM 130
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*A 555
YPPLS++ G + LA+FSLH+ G+SS F L P+ +
Sbjct: 131 YPPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWT 190
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ T+ A +T+LL DR+ TS
Sbjct: 191 LFGTSILLVTSVPVLAAGLTLLLLDRHFSTS 221
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 86.2 bits (204), Expect = 6e-16
Identities = 59/212 (27%), Positives = 79/212 (37%), Gaps = 2/212 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXXXX 192
S +HK IG Y EL G L GD Q YN ++T+H
Sbjct: 10 SVSHKMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMV 69
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N +P++ PD+ FPR+NN+ F + G G G
Sbjct: 70 FAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGW 129
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
T+YP L H + +F++HL GISS SF LF+
Sbjct: 130 TLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIW 189
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
A ITA AG +T++L DRN TS
Sbjct: 190 AALITAILLIITLPVLAGGVTLILCDRNFNTS 221
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 84.6 bits (200), Expect = 2e-15
Identities = 52/132 (39%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N LVP+++ APD+AFPR+NNI F V GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 367 G*TVYPPLSSNI 402
G TV LS I
Sbjct: 125 GWTVKCKLSQII 136
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 79.8 bits (188), Expect = 5e-14
Identities = 48/118 (40%), Positives = 58/118 (49%)
Frame = +1
Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
ELG PGSL+ DDQ+YN +VTAH N LVPL+L APD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISS 465
+ F + G + PL G SV LAIF LHL G+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 78.6 bits (185), Expect = 1e-13
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 186
++STNHKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 9 LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFL 68
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N VP+++ +PD+AFPR+NNI F +V G G+
Sbjct: 69 MIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGS 128
Query: 367 G*TV 378
G TV
Sbjct: 129 GWTV 132
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 72.5 bits (170), Expect = 8e-12
Identities = 36/65 (55%), Positives = 42/65 (64%)
Frame = +1
Query: 247 LILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVX 426
L+L APD+AFPR+NN+ F +V NGAGTG TVYPPLSS AH G SV
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 427 LAIFS 441
LAI+S
Sbjct: 61 LAIYS 65
Score = 33.9 bits (74), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 546 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLXYII 650
CM C +Y TCFS S+Y IIN K Y I
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFI 131
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 70.1 bits (164), Expect = 4e-11
Identities = 45/132 (34%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
++STN KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 11 LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N L+PL+L A D+AF R+NNI F +V GAGT
Sbjct: 71 MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130
Query: 367 G*TVYPPLSSNI 402
G TV SS +
Sbjct: 131 GWTVKKICSSKM 142
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 69.3 bits (162), Expect = 7e-11
Identities = 59/218 (27%), Positives = 82/218 (37%), Gaps = 8/218 (3%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ +HKDIG LY EL +PG + + YN+++T+H
Sbjct: 91 TVDHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFL 150
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXN---GAGTG 369
N L+PL++ A D+AFPRIN I F A TG
Sbjct: 151 FATPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTG 209
Query: 370 *TVYPPLS-----SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQ 534
T+Y PLS N A+ G V L + LHL G+S+ S+
Sbjct: 210 WTMYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWAN 267
Query: 535 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
L +F + + AI +LL DRN TS
Sbjct: 268 LDIFSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTS 305
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 68.5 bits (160), Expect = 1e-10
Identities = 56/211 (26%), Positives = 78/211 (36%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
I S NH D+ LY +L P L D +YN VT H
Sbjct: 4 IMSVNHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMV 61
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N L+P PD+ FPR+N + F ++ + A G
Sbjct: 62 FFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLS-----LLLFSMASAGW 116
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
T YPPLSS SV ++FSLHL GI+S + L LF
Sbjct: 117 TFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCW 170
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
++ + + A IT++LTD++L T
Sbjct: 171 SIVLVSLLLVLSLPVLAVGITLILTDKHLGT 201
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/83 (44%), Positives = 46/83 (55%)
Frame = +1
Query: 385 PLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 564
PL+S+IAH G SV +AIFSLHL G+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 565 TAFXXXXXXXXXAGAITILLTDR 633
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 36.7 bits (81), Expect = 0.48
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +3
Query: 219 WRIWKLIXXXXXXXXXXXIPTNK*YKILTPTPLPY 323
W IWKLI P NK YKILT PL Y
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTY 62
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 67.7 bits (158), Expect = 2e-10
Identities = 73/208 (35%), Positives = 85/208 (40%), Gaps = 1/208 (0%)
Frame = +1
Query: 28 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 204
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 205 XXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYP 384
L PL + AP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 385 PLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 564
P SS +AH +V L IF LHL GISS ++ LF
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180
Query: 565 TAFXXXXXXXXXAGAITILLTDRNLXTS 648
A AIT+L R S
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXS 208
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 64.1 bits (149), Expect = 3e-09
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 186
+YSTN KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVL 65
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT 366
N L+PL++ A D++F R+NNI F +V +GAGT
Sbjct: 66 MIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGT 125
Query: 367 G*TV 378
G TV
Sbjct: 126 GWTV 129
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 63.3 bits (147), Expect = 5e-09
Identities = 42/165 (25%), Positives = 62/165 (37%), Gaps = 1/165 (0%)
Frame = +1
Query: 154 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXX 333
Y I T H N L+PL++ A D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 334 XRXIVXNG-AGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXX 510
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 511 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
++ +LPL + + +TA A +LL DR+ T
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGT 250
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 62.1 bits (144), Expect = 1e-08
Identities = 46/175 (26%), Positives = 67/175 (38%)
Frame = +1
Query: 124 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFX 303
PG + D + YN ++T H N L+PL++ A D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 304 XXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXX 483
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 484 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+F + LFV + AGA+T+L D+ L T+
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTN 174
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 60.5 bits (140), Expect = 3e-08
Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 6/216 (2%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXX 186
+T+HK IG LY EL G I + IYN +T H
Sbjct: 15 TTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLI 74
Query: 187 XXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRF-XXXXXXXXXXXXRXIVXNGAG 363
N L+P+++ +++ PR+N I F ++
Sbjct: 75 MLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPIS 134
Query: 364 TG*TVYPPLSSNIAHR-GRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
+G T+YPPLS+ A G ++ L++ +H+ GISS +F +
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNIN 194
Query: 541 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
++ ++ +T+ AIT LL DRN+ ++
Sbjct: 195 IYNFSIIVTSILLIGSLPILGVAITGLLLDRNINST 230
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 60.1 bits (139), Expect = 5e-08
Identities = 46/186 (24%), Positives = 68/186 (36%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
+ + +HK IG ++ EL PG I D YN + T H
Sbjct: 30 LLTQDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMI 89
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N L+P+++ A D+AFP++N + F +V GA TG
Sbjct: 90 FLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVALF-GMVQGGADTGW 148
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
T Y P S+ + V L F L G SS + +LPLFV
Sbjct: 149 TFYTPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVW 205
Query: 553 AVGITA 570
++ T+
Sbjct: 206 SIYATS 211
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 60.1 bits (139), Expect = 5e-08
Identities = 50/212 (23%), Positives = 74/212 (34%), Gaps = 1/212 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
I +T+HKDIG LY +L P S Y VT H
Sbjct: 16 ITTTDHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIML 75
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGA-GTG 369
N +VPL + A D+AFPR+N + + +GA G
Sbjct: 76 LWFASPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVG 134
Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
T+Y PL++ I G + LA ++ L +S + ++P+F
Sbjct: 135 WTLYAPLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFT 194
Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
++ T +LL DRNL T
Sbjct: 195 WSILFTVILMLWAFPPLMVGGALLLLDRNLGT 226
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 58.8 bits (136), Expect = 1e-07
Identities = 50/209 (23%), Positives = 75/209 (35%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
+ + +HK IG ++ EL PG I D YN T H
Sbjct: 37 LLTVDHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMI 96
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N ++PL+L A D+AFPR+N + ++ G TG
Sbjct: 97 FLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALW-GMLNGGLDTGW 155
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
T Y P S AH +V +F + G SS ++ ++PLFV
Sbjct: 156 TFYTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVW 212
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNL 639
A+ T+ G + +L+T NL
Sbjct: 213 AIYATS-CIQVLATPVIGLLLVLVTVENL 240
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 58.4 bits (135), Expect = 1e-07
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 2/212 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ +HKDIG LY EL + +YN ++T+H
Sbjct: 65 TVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFL 124
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXN--GAGTG* 372
N +PL++ A D+AFPRIN I F ++ A T
Sbjct: 125 FGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSW 183
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
T+Y PLS ++ +V + + LHL G+S+ + L +F
Sbjct: 184 TMYTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSW 241
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ + A+ +LL DRN T+
Sbjct: 242 TMLTQSGLILFAFPLFGSALIMLLLDRNFGTT 273
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 57.6 bits (133), Expect = 2e-07
Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 2/213 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXX 189
I++T+HK +G LY EL G I DD +YNT + H
Sbjct: 9 IFTTDHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAM 68
Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
N +PL++ A D+AFPR+N + + +
Sbjct: 69 ILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIM 128
Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
T YPP S I H + FS+ L G +S +++L +FV
Sbjct: 129 WTGYPPYSI-ITH--GNTAFYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFV 185
Query: 550 *AVGITAFXXXXXXXXXAG-AITILLTDRNLXT 645
A + AF G A+T+L D+ + T
Sbjct: 186 WAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGT 217
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 56.8 bits (131), Expect = 4e-07
Identities = 45/207 (21%), Positives = 68/207 (32%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
I + +HK +G +Y A+L P + D YN I T H
Sbjct: 48 ITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMI 107
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N +VPL + A D+AFP +NN+ F ++ G
Sbjct: 108 IFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGW 166
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
T Y PL+SN G + L + GI + + ++P+F
Sbjct: 167 TSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTW 226
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDR 633
IT A+ +L DR
Sbjct: 227 TTLITMVIIVFAFPVLTVALALLSFDR 253
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 56.8 bits (131), Expect = 4e-07
Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 4/215 (1%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQI--YNTIVTAHAX 183
I + NHK +G Y EL + +I + + YN I T H
Sbjct: 9 ITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGI 68
Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAG 363
N +P++ +P++A+PRIN+I G G
Sbjct: 69 IMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGG 128
Query: 364 TG*TVYPPLSSNIAHRGR-SVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
TG T+YPPLS+++ +V + IF L + G++S + L
Sbjct: 129 TGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILS 188
Query: 541 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
+ ++ IT+ G + +LL+D + T
Sbjct: 189 VSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNT 223
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 56.4 bits (130), Expect = 6e-07
Identities = 46/212 (21%), Positives = 73/212 (34%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
+ + +HK IG +Y +L P + +++N + T H
Sbjct: 27 VSTLDHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMV 86
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N VPL++ A D+AFPR+N+ F + + G
Sbjct: 87 FLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGW 145
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
Y PLSS + V I L + GI S S ++PLFV
Sbjct: 146 FSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVW 205
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ + A A+ +LL DR L ++
Sbjct: 206 MMLMQAILIILALPALNSALAMLLIDRWLGSA 237
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 56.4 bits (130), Expect = 6e-07
Identities = 48/212 (22%), Positives = 75/212 (35%), Gaps = 3/212 (1%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDD--QIYNTIVTAHAXXX 189
S NHK IG Y EL G +I D +IYN + T H
Sbjct: 14 SGNHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIM 73
Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
N L P++L D+ +PR+N + G+GTG
Sbjct: 74 VFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTG 133
Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
T+YPPLS+++++ G + IF L GI+S D++
Sbjct: 134 WTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAA 191
Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
++ +T+F ++ DR+ T
Sbjct: 192 WSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNT 223
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 54.8 bits (126), Expect = 2e-06
Identities = 46/208 (22%), Positives = 71/208 (34%), Gaps = 1/208 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+T+HK +G +Y AEL PG ++ +N + T H
Sbjct: 35 TTDHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLL 94
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGT-G*T 375
N ++PL + APD+AFPR+N F + GA G T
Sbjct: 95 YGTPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWT 153
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
+Y PLS I G + I + GI S + ++P+F
Sbjct: 154 MYSPLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWN 213
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNL 639
+ + + A +L DR L
Sbjct: 214 IFVVSVLALLIFPLLLAAALGVLYDRKL 241
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 53.6 bits (123), Expect = 4e-06
Identities = 54/210 (25%), Positives = 74/210 (35%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
S +HK IG LY L +P + +YN +VT H
Sbjct: 107 SLDHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFF 166
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N +P+ L D+ PR+N++ + G G G T+
Sbjct: 167 FLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELS--LYYGCGIGWTL 224
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
YPPLS G V +FSLHL G+SS SF+ + V A
Sbjct: 225 YPPLSI-WEGSGFGVDYLMFSLHLAGVSS----LIGSVNFISTIFSRLSFN-CSIIVWAY 278
Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXTS 648
T+ A IT+LL DRN T+
Sbjct: 279 LFTSVLLLLSLPVLASGITMLLFDRNFGTA 308
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 53.2 bits (122), Expect = 5e-06
Identities = 46/209 (22%), Positives = 69/209 (33%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+T+HK IG +Y +LG P + +YN + T H
Sbjct: 28 TTDHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFL 87
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N +VPL++ A D+AFPR+N + V G
Sbjct: 88 GLMPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFA 146
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
Y PL+ V I + L G++S + +++PLFV
Sbjct: 147 YAPLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQ 206
Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXT 645
+ AF A LL DR+ T
Sbjct: 207 LVVAFILIFAFPVLTVATIQLLFDRHFGT 235
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 52.4 bits (120), Expect = 9e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +1
Query: 343 IVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISS 465
+V G G G TVYPPL+S + H G SV AIFSLHL G SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 52.0 bits (119), Expect = 1e-05
Identities = 49/214 (22%), Positives = 73/214 (34%), Gaps = 3/214 (1%)
Frame = +1
Query: 16 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
++T+ K IG Y EL P + + D +YN + T H
Sbjct: 32 FNTDAKVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLF 91
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNG-AGTG* 372
N L+P ++ APD+AFP++N F G A +G
Sbjct: 92 LFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGW 150
Query: 373 TVYPPLS--SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
YPP+S + + H L I ++ L GISS F ++P+F
Sbjct: 151 WSYPPMSLQNPLGHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVF 210
Query: 547 V*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V G +LL D + TS
Sbjct: 211 VWTAWAAQTIQLIGLPALTGGAVMLLFDLSFGTS 244
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 52.0 bits (119), Expect = 1e-05
Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 1/208 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXX 189
++ST+H D+G LY AEL PG+ I D +N + T H
Sbjct: 15 MFSTHHTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHG-TT 73
Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
N VP+++ D+A+P++N I F + T
Sbjct: 74 LIFLFILPFASAVGNYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT- 132
Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
PP S I+ G + + IF L + GISS S Q+PL
Sbjct: 133 ----PPYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLA 187
Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDR 633
+ ++ A A+ +LLTDR
Sbjct: 188 WSYLSSSLIVLVALPTFAAALLMLLTDR 215
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 51.6 bits (118), Expect = 2e-05
Identities = 51/211 (24%), Positives = 68/211 (32%)
Frame = +1
Query: 16 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 195
+ +HK IG Y EL P ++YN ++T H
Sbjct: 23 FCVDHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIF 82
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
N L+PL++ D+AFPR+N + F V G T
Sbjct: 83 LWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWT 140
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
YPPLS G L I SL L G SS +PLF A
Sbjct: 141 SYPPLSLLSGKWGEE--LWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWA 198
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ T+ A A+ +L D TS
Sbjct: 199 MLATSSLILLSTPVLASALILLSFDLIAGTS 229
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 51.6 bits (118), Expect = 2e-05
Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 1/211 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ +HK IG +Y +L P + + YN I+T H
Sbjct: 21 TVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFF 80
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGA-GTG*T 375
N +VPL+L A D+A PR+N + GA G T
Sbjct: 81 FIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT 140
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
Y P S A V + ++ L G SS S ++P++V +
Sbjct: 141 FYYPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWS 197
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
V + A ++L +R + S
Sbjct: 198 VFAASVLNLFSLAGLTAATLLVLLERKIGLS 228
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 50.4 bits (115), Expect = 4e-05
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 4/170 (2%)
Frame = +1
Query: 148 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXX 327
+ Y +VT HA N L+PL++ A D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 328 XXXRXIV-XNGAGTG*TVYPPLS---SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXX 495
+GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 496 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXT 645
+ +LPL + A+ ITA A ++L DR + T
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGT 255
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 50.0 bits (114), Expect = 5e-05
Identities = 45/212 (21%), Positives = 71/212 (33%), Gaps = 2/212 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+TNHKDIG LY EL + G+ + YN V+ H
Sbjct: 19 TTNHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFW 78
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N LVPL + A D+AFPR+N + + G T+
Sbjct: 79 FISPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTM 137
Query: 379 YPPLS--SNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 552
Y PL+ + I G + +L + + +P+F
Sbjct: 138 YAPLNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSL 197
Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
++ +T + A+ IL +D L T+
Sbjct: 198 SINLTVWMMLFAFAALLAALMILASDHILGTT 229
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 48.8 bits (111), Expect = 1e-04
Identities = 48/210 (22%), Positives = 70/210 (33%), Gaps = 1/210 (0%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXX 195
+ +HK IG Y +L P + IG D+ YN I T H
Sbjct: 26 TVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMF 84
Query: 196 XXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*T 375
LVPL++ IAFPR+N + V G G
Sbjct: 85 LFAVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWF 143
Query: 376 VYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 555
Y PLS G+ + + +S+ S D++PLFV +
Sbjct: 144 AYVPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWS 203
Query: 556 VGITAFXXXXXXXXXAGAITILLTDRNLXT 645
+ +T+F A T L+ DR + T
Sbjct: 204 MLVTSFLVILAMPAIMIASTSLILDRLVGT 233
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 45.2 bits (102), Expect = 0.001
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 4/173 (2%)
Frame = +1
Query: 142 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXX 321
+ + Y +VT H N L+PL + A D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 322 XXXXXRXIVXNGAGTG*-TVYPPLSS---NIAHRGRSVXLAIFSLHLXGISSXXXXXXXX 489
+ G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 490 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLXTS 648
SF +LPL + A ITA A +L+ DR+L TS
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTS 270
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 45.2 bits (102), Expect = 0.001
Identities = 33/123 (26%), Positives = 40/123 (32%)
Frame = +3
Query: 276 PTNK*YKILTPTPLPYIINFKXNCXKWCRNRMNSLPPTFI*YRT*RKIRXSCYFFTTFXX 455
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 456 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 635
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 636 LXY 644
Y
Sbjct: 199 PKY 201
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = +1
Query: 4 RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAH 177
+K +Y+ NHK I Y EL +P S GD Y +VTAH
Sbjct: 52 KKYVYTINHKRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAH 111
Query: 178 AXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRF 300
N L+P + + D+A+PR+N+I F
Sbjct: 112 GLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 44.4 bits (100), Expect = 0.002
Identities = 47/210 (22%), Positives = 67/210 (31%), Gaps = 3/210 (1%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIG--DDQIYNTIVTAHAXXX 189
S +HK IG +Y +L G G + Y+ I TAH
Sbjct: 52 SVDHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTAHGVIM 111
Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
N +VPL + A D+AFP +N++ F V N A TG
Sbjct: 112 IIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTG 170
Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
YPPL+ V I++L + GI + +P+F
Sbjct: 171 WVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFT 230
Query: 550 *AVGITAFXXXXXXXXXAGAITILLTDRNL 639
GA+ +L DR L
Sbjct: 231 WTCTWANVLIATSFPILTGALAMLALDRYL 260
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 44.0 bits (99), Expect = 0.003
Identities = 36/184 (19%), Positives = 60/184 (32%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ NH D+G ++ A+L P S + YN + T H
Sbjct: 26 TVNHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFL 85
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
L+P +L + D+AFPR+ F + +G +
Sbjct: 86 FAIPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFM 144
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
YPPLSS + G + + + IS+ S ++P+F
Sbjct: 145 YPPLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYA 204
Query: 559 GITA 570
+TA
Sbjct: 205 LVTA 208
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 42.7 bits (96), Expect = 0.007
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +3
Query: 549 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLXYII 650
M C +YS +TC WSYYN IN SKL YI+
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYIL 117
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 42.3 bits (95), Expect = 0.010
Identities = 48/217 (22%), Positives = 72/217 (33%), Gaps = 5/217 (2%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSL-IGDDQIYNTIVTAHAXXX 189
++S + K I Y +LG PG+ D Y +T H
Sbjct: 33 VFSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIM 92
Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNG-AGT 366
N L+PL++ A D+ FP +N + + V G G
Sbjct: 93 VIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGA 152
Query: 367 G*TVYPP--LSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
G T+YPP + S + + L + SL L I + +LP
Sbjct: 153 GWTLYPPQAILSGTPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLP 212
Query: 541 LFV*AV-GITAFXXXXXXXXXAGAITILLTDRNLXTS 648
L V + T G++ +LL DR L TS
Sbjct: 213 LTVWGIFTATVMALLAFPALFVGSVMLLL-DRLLGTS 248
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 42.3 bits (95), Expect = 0.010
Identities = 37/210 (17%), Positives = 67/210 (31%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ +HK I LY +L P + Q YN ++T H
Sbjct: 21 TVDHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N +VPL + A D++FP +N + F + G T
Sbjct: 81 AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
Y LS + +G + + L + G+ + ++ +LPLF
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTT 197
Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXTS 648
+ + + +++ DR T+
Sbjct: 198 FVASALILFAFPPLTVGLALMMLDRLFGTN 227
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 41.1 bits (92), Expect = 0.022
Identities = 46/212 (21%), Positives = 67/212 (31%), Gaps = 5/212 (2%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAEL-----GNPGSLIGDDQIYNTIVTAHAX 183
+ +HK IG +Y +L G+ G L + Y+ I TAH
Sbjct: 51 TVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGV 108
Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAG 363
N VPL + A D+AFP +N++ F V A
Sbjct: 109 IMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAK 167
Query: 364 TG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 543
TG YPPL+ G V I++L L G+ + +P+
Sbjct: 168 TGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPI 227
Query: 544 FV*AVGITAFXXXXXXXXXAGAITILLTDRNL 639
F A+ +L DR L
Sbjct: 228 FTWTCTWANVLIVASFPILTAALALLTVDRYL 259
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 40.7 bits (91), Expect = 0.030
Identities = 31/176 (17%), Positives = 59/176 (33%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ NH D+G ++ A+L +P S + Y + T H
Sbjct: 26 TVNHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFL 85
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
L+P +L + D+A+PR++ F + +G +
Sbjct: 86 FAIPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFM 144
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 546
YPPL+S + G + + + IS+ S D++P++
Sbjct: 145 YPPLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIY 200
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 40.7 bits (91), Expect = 0.030
Identities = 46/213 (21%), Positives = 72/213 (33%), Gaps = 6/213 (2%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGN--PGSLIGD---DQIYNTIVTAHAX 183
+TN IG LY + N PGS + D + +Y ++ H
Sbjct: 11 TTNAHYIGILYILLSIINFVLAGIAAMYMRLTIANTPPGSPVQDPFNELLYTWFMSLHGL 70
Query: 184 XXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIV-XNGA 360
N LVP ++ APD+ +PRIN + F + +G
Sbjct: 71 GMLLLFAMQAVAGAA-NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGD 129
Query: 361 GTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLP 540
G T+YPPLS+ + V L + + + G SS +
Sbjct: 130 SIGWTLYPPLST--ISKSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMS 187
Query: 541 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 639
LF +V + A +LL +R+L
Sbjct: 188 LFAWSVLAASMLMVTALPPLAAGAIMLLLERHL 220
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 40.3 bits (90), Expect = 0.039
Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 2/151 (1%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAE--LGNPGSLIGDDQIYNTIVTAHAXXXX 192
ST+HK IG +Y A+ +G G + D + + + H
Sbjct: 73 STDHKKIGIMYVVLALVMLTRAIAEAVLMRAQGAVGLGGGFLSSDH-FAQLFSTHGTIMI 131
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG* 372
N +VPL + A D+AFP +N+I +V + G
Sbjct: 132 FFMAMPFLTGLI-NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGW 190
Query: 373 TVYPPLSSNIAHRGRSVXLAIFSLHLXGISS 465
YPP + + + G V I+SL L + S
Sbjct: 191 FGYPPYTETLYNPGIGVDYWIWSLTLASLGS 221
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 39.9 bits (89), Expect = 0.052
Identities = 33/146 (22%), Positives = 46/146 (31%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+T+HK IG LY +L P + YN ++T HA
Sbjct: 29 TTDHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFF 88
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N +PL L D+A PR+N G T
Sbjct: 89 FLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTF 148
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXG 456
Y PL+ + G SV + L+ G
Sbjct: 149 YYPLTMDGNQTGVSVFMVAVILNGLG 174
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 39.5 bits (88), Expect = 0.068
Identities = 41/209 (19%), Positives = 66/209 (31%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ +HK IG Y +L P + + Y+++ T H
Sbjct: 46 TVDHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFL 105
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
N L PL+L + D+AFPR+ + + G
Sbjct: 106 YALPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFN 164
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
Y PL+S G ++ + + L GIS+ S D+LP+ V
Sbjct: 165 YVPLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGT 224
Query: 559 GITAFXXXXXXXXXAGAITILLTDRNLXT 645
+ + A +L DRN T
Sbjct: 225 LTASVSNLVAVPSVSLAFLLLWLDRNAGT 253
>UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2;
Yarrowia lipolytica|Rep: Cytochrome c oxidase subunit I
- Yarrowia lipolytica (Candida lipolytica)
Length = 399
Score = 39.5 bits (88), Expect = 0.068
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 180
++STN KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 11 LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHA 68
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 39.1 bits (87), Expect = 0.090
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 180
+YSTN KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 38.7 bits (86), Expect = 0.12
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 159
++STNHKDIGTLY EL PG+ I G+ Q+YN
Sbjct: 9 LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 37.5 bits (83), Expect = 0.28
Identities = 22/92 (23%), Positives = 36/92 (39%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 192
+ + +HK IG +Y +L PG + + +N + T HA
Sbjct: 24 VATVDHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMI 83
Query: 193 XXXXXXXXXXXXXN*LVPLILXAPDIAFPRIN 288
N +PL++ A D+AFPR+N
Sbjct: 84 FLGVMPLLSAFM-NYFLPLMIGARDVAFPRLN 114
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 37.5 bits (83), Expect = 0.28
Identities = 24/106 (22%), Positives = 41/106 (38%)
Frame = +1
Query: 232 N*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHR 411
N ++PL + + D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 412 GRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
V +S+ + GI + F+++ +F+
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFM 224
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 37.5 bits (83), Expect = 0.28
Identities = 46/193 (23%), Positives = 63/193 (32%), Gaps = 11/193 (5%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG------SLIG----DDQIYNT 162
I++TNHK IG LY +L P S+ D YN
Sbjct: 27 IFTTNHKQIGLLYILTSLFFFIGGGVMALLMRVQLAIPRYDLVKYSIFSGRFLDALQYNQ 86
Query: 163 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRX 342
+VT H L+PL + + D+ +PR+N + +
Sbjct: 87 LVTIHGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGF 145
Query: 343 IVXNG-AGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXX 519
+ G TG TVY PLSS A ++ L GI +
Sbjct: 146 FLPGGNLDTGWTVYEPLSSFKFTPYLGADTAAAAVVLRGIGTIIASTEILATIFKARAKG 205
Query: 520 XSFDQLPLFV*AV 558
LPLFV AV
Sbjct: 206 YRMMNLPLFVWAV 218
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.1 bits (82), Expect = 0.36
Identities = 28/78 (35%), Positives = 36/78 (46%)
Frame = +1
Query: 412 GRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 591
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 592 XXXAGAITILLTDRNLXT 645
AGAIT+LLTDRN+ T
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 36.3 bits (80), Expect = 0.64
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 3/144 (2%)
Frame = +1
Query: 148 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXX 327
+ Y + T HA N L+PL++ A D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 328 XXXRXIVXNGAGTG*TVYP---PLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXX 498
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 499 XXXXXXXXSFDQLPLFV*AVGITA 570
+F +LP+ + + ITA
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITA 233
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 35.9 bits (79), Expect = 0.84
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 159
++STNHKDIGT Y EL PG+ I G+ Q+YN
Sbjct: 9 LFSTNHKDIGTPYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 9 MNLFYKS*RYWNIIFYFWYLIRNNWNIFKTFNS 107
M + KS YWNI+F+FWYLI ++ K NS
Sbjct: 339 MIILNKSQSYWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIV 168
+YSTN KDI LY EL PGS L G+ Q++N +V
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 33.9 bits (74), Expect = 3.4
Identities = 33/174 (18%), Positives = 57/174 (32%)
Frame = +1
Query: 112 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINN 291
+L P + D + YN + + H ++PL+L D+ FPR+N
Sbjct: 64 QLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRLNA 122
Query: 292 IRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXX 471
+ ++ G YPPL+ G + + IS+
Sbjct: 123 FGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFMEISALV 182
Query: 472 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 633
S +++P+FV AV + +F A +L DR
Sbjct: 183 AAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDR 236
>UniRef50_Q6PW10 Cluster: Cytochrome oxidase subunit I; n=1;
Bohadschia argus|Rep: Cytochrome oxidase subunit I -
Bohadschia argus
Length = 247
Score = 33.5 bits (73), Expect = 4.5
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 225 IWKLIXXXXXXXXXXXIPTNK*YKILTPTPLPYIINFKXNCXKWCRNRMNSLPPTFI*YR 404
+W L IP N+ ++L L + + K CRNRMN+LP
Sbjct: 28 LWNLTYTFNDSSPWYGIPPNEQNELLVSPSLFHSTPSISSSGKSCRNRMNNLPTLIQNNS 87
Query: 405 T*RKIRXSCYFFTT 446
R + YFF+T
Sbjct: 88 PRRSVSSPRYFFST 101
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 33.1 bits (72), Expect = 5.9
Identities = 38/187 (20%), Positives = 58/187 (31%), Gaps = 1/187 (0%)
Frame = +1
Query: 13 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIGDDQIYNTIVTAHAXXX 189
I + N++ IG LY +L P L+G D YN I T H
Sbjct: 34 ISAVNNQVIGILYVGAAFLFFILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTM 92
Query: 190 XXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG 369
L+P +L A D+ FPR++ G
Sbjct: 93 MFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGG 151
Query: 370 *TVYPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 549
+YPPL+ G + + + IS+ S ++P+F
Sbjct: 152 WFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFA 211
Query: 550 *AVGITA 570
A+ I A
Sbjct: 212 WAMLIFA 218
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 33.1 bits (72), Expect = 5.9
Identities = 31/185 (16%), Positives = 58/185 (31%)
Frame = +1
Query: 19 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 198
+ +H+ +G + +L P + + YN + T H
Sbjct: 52 AVSHRAVGKRFLITGFIFFLIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFL 111
Query: 199 XXXXXXXXXXXN*LVPLILXAPDIAFPRINNIRFXXXXXXXXXXXXRXIVXNGAGTG*TV 378
L+PL++ A D+ FPR+ + + G +
Sbjct: 112 FAIPMLEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFM 170
Query: 379 YPPLSSNIAHRGRSVXLAIFSLHLXGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 558
Y PLS++ G S + + L I+S S ++P+ + +
Sbjct: 171 YVPLSTSAYTEGLSADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYL 230
Query: 559 GITAF 573
TAF
Sbjct: 231 LATAF 235
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 32.7 bits (71), Expect = 7.8
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = +1
Query: 118 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRINNIR 297
G PG ++ + Y +++T H N +P+ + A D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 298 FXXXXXXXXXXXXRXIVXNGAG-TG*TVYPPLSS 396
F + +G +G T Y LS+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSA 167
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 7.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 632 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 510
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,272,025
Number of Sequences: 1657284
Number of extensions: 6284604
Number of successful extensions: 14799
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 13525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14607
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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