Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C11
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   152   5e-38
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    93   4e-20
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    79   6e-16
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   2.4  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   4.1  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.5  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  152 bits (368), Expect = 5e-38
 Identities = 68/107 (63%), Positives = 82/107 (76%)
 Frame = +3

Query: 72  MGVTVETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 251
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 252 DEGVAKMSVXERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 392
           DEGV KMS+ E+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 49/106 (46%), Positives = 65/106 (61%)
 Frame = +3

Query: 75  GVTVETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 254
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 255 EGVAKMSVXERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 392
            GVA M      K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 46/103 (44%), Positives = 57/103 (55%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 257
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 258 GVAKMSVXERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 386
           G+  M V     +      AYG +  PG IP NS L+FDV+LL
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +2

Query: 485 FYHI---LSLXSLYQHYVYL*WKYIY---TYAIRXNFILYVNXFMVRLI 613
           F+HI   L L S YQ++  L W++IY   T   +  FI+Y    + RL+
Sbjct: 36  FFHINFGLHLLSHYQYWRILLWQFIYWNSTEVFQALFIIYQARDVERLL 84


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 201 GKPFKFRIGKSEVIRGWDEGVAKMSVXERAKLTCSPDYAY 320
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDS 188
           V+  ++  GD+  +P +GQT+ +  T    N KK  S
Sbjct: 175 VSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSS 211


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
 Frame = +2

Query: 503 LXSLYQHYV---YL*W-KYI-YTYAIRXNFILY 586
           L ++++H+    YL W K+I Y+Y +R N++LY
Sbjct: 337 LYAMFKHWGQDGYLEWLKHIRYSYTLRRNYLLY 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,918
Number of Sequences: 5004
Number of extensions: 52285
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)