Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C10
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0Q1 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    33   7.9  

>UniRef50_Q4Z0Q1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 89

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 420 RFSRFKYIVSLQI-IHNIIWQVIHVDCLCILIVFLFQIATFXNHYATR-CLYILYQY 584
           RF+ F +     + IH +I+ ++HV  LCILI F+  +     +Y T  CL+  + Y
Sbjct: 27  RFTFFIFFFKCHVFIHTVIF-IVHVTMLCILIDFIITLYVDLKNYKTPICLFYFFFY 82


>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 5   RRGRLPTRWTDIIKEATNTSVPGAIKQAECRQHWRKLVQK 124
           +RGR   +W D IKE T  +   A + A+ R +WRK  ++
Sbjct: 360 KRGRQRKQWFDNIKEWTGLTYTEAKRLAQDRNNWRKTTRR 399


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,815,931
Number of Sequences: 1657284
Number of extensions: 11457063
Number of successful extensions: 26920
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26908
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)