Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C10
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858...    30   1.9  
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997...    28   5.6  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   5.6  

>05_03_0118 -
           8586731-8587220,8587331-8587846,8588842-8588906,
           8589483-8589989
          Length = 525

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 347 YYLLIQCNNPYKIHH*ATSLIAHTLVNNSQSFI 249
           Y  LI CN   KIH    SL  H   N S++FI
Sbjct: 74  YLGLITCNRARKIHQEVNSLFTHLNPNFSENFI 106


>09_06_0320 -
           22297579-22297760,22298433-22299358,22299422-22299747,
           22300591-22300660,22301632-22301726,22301917-22302048,
           22302154-22302222,22302953-22303051,22303169-22303253,
           22303353-22303453,22303660-22303728,22303861-22303901,
           22304085-22304303,22304444-22304470,22304562-22304660,
           22304898-22305106,22305382-22305485,22305753-22305894,
           22305991-22306289,22306508-22306903
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 30  GRTLSRRPQTPASRAPLSRPNAGSIGGSWCKNWTK 134
           G +LS     P      + P AG+ GGS CK+W +
Sbjct: 39  GSSLSASSDFPFHLPSAAAPAAGAPGGSPCKSWAQ 73


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 40  YQGGHKHQRPGRH*AGRMQAALEEAGAKTGPRWSRPSAMRKRQ 168
           Y+G H H +P  H AG   AA  +      P  +  + +R++Q
Sbjct: 302 YEGEHNHAQPPHHDAGSKTAAAAKHSQHQPPPSAAAAVVRQQQ 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,836
Number of Sequences: 37544
Number of extensions: 301813
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)