Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C10
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             31   0.62 
SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)     29   3.3  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 25/102 (24%), Positives = 46/102 (45%)
 Frame = +3

Query: 279 VSYETSGSMVNFVXIVTLYQ*IIKQHNTLIHLF*NLHQVH*LHYEIMRFSRFKYIVSLQI 458
           +SY T      F  ++ LY  I  +     HLF  L  ++ + Y  + FS    I  L  
Sbjct: 140 ISYRTIHFSPLFTYLICLYP-ISYRTIHFSHLFTYLIHLYPISYRTIHFSPL--ITYLIR 196

Query: 459 IHNIIWQVIHVDCLCILIVFLFQIATFXNHYATRCLYILYQY 584
           ++ I ++ IH   L   ++ L+ I+    H++    Y+++ Y
Sbjct: 197 LYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIHLY 238



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = +3

Query: 285 YETSGSMVNFVXIVTLYQ*IIKQHNTLIH---LF*NLHQVH*LHYEIMRFSR-FKYIVSL 452
           Y  S   ++F  +VT +  +       IH   LF  L  ++ + Y  + FS  F Y+++L
Sbjct: 318 YPISYRTIHFSPLVTYHIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLINL 377

Query: 453 QIIHNIIWQVIHVDCLCILIVFLFQIATFXNHYATRCLYILYQY 584
              + I ++ IH   L   ++ L+ I+    H++    Y+++ Y
Sbjct: 378 ---YPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIHLY 418



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +3

Query: 279 VSYETSGSMVNFVXIVTLYQ*IIKQHNTLIHLF*NLHQVH*LHYEIMRFSR-FKYIVSLQ 455
           +SY T      F  ++ LY  I  +     HL   L  ++ + Y  + FS  F Y ++L 
Sbjct: 220 ISYRTIHFSPLFTYLIHLYP-ISYRTIHFSHLVTYLIHLYPISYRTIHFSPLFTYRINL- 277

Query: 456 IIHNIIWQVIHVDCLCILIVFLFQIATFXNHYATRCLYILYQY 584
             + I ++ IH   L   ++ L+ I+    H++    Y++  Y
Sbjct: 278 --YPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLLTYLINLY 318


>SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)
          Length = 935

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 369 HLF*NLHQVH*LHYEIMRFSRFKYIVSLQIIHNIIWQVIHVDCLCILIVFLFQIATFXNH 548
           HLF  ++QVH   Y ++  S  +  V  +   +I + +I       LIV L  IA + NH
Sbjct: 373 HLFFTVYQVHTHTYSLVPGSYSRLTVLFRFERSIGFFLIQTYIPAYLIVMLSWIAFWINH 432

Query: 549 YAT 557
            +T
Sbjct: 433 TST 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,462
Number of Sequences: 59808
Number of extensions: 375071
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)