BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C10 (654 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 31 0.62 SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40) 29 3.3 >SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) Length = 435 Score = 31.5 bits (68), Expect = 0.62 Identities = 25/102 (24%), Positives = 46/102 (45%) Frame = +3 Query: 279 VSYETSGSMVNFVXIVTLYQ*IIKQHNTLIHLF*NLHQVH*LHYEIMRFSRFKYIVSLQI 458 +SY T F ++ LY I + HLF L ++ + Y + FS I L Sbjct: 140 ISYRTIHFSPLFTYLICLYP-ISYRTIHFSHLFTYLIHLYPISYRTIHFSPL--ITYLIR 196 Query: 459 IHNIIWQVIHVDCLCILIVFLFQIATFXNHYATRCLYILYQY 584 ++ I ++ IH L ++ L+ I+ H++ Y+++ Y Sbjct: 197 LYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIHLY 238 Score = 29.9 bits (64), Expect = 1.9 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Frame = +3 Query: 285 YETSGSMVNFVXIVTLYQ*IIKQHNTLIH---LF*NLHQVH*LHYEIMRFSR-FKYIVSL 452 Y S ++F +VT + + IH LF L ++ + Y + FS F Y+++L Sbjct: 318 YPISYRTIHFSPLVTYHIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLINL 377 Query: 453 QIIHNIIWQVIHVDCLCILIVFLFQIATFXNHYATRCLYILYQY 584 + I ++ IH L ++ L+ I+ H++ Y+++ Y Sbjct: 378 ---YPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIHLY 418 Score = 27.9 bits (59), Expect = 7.6 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = +3 Query: 279 VSYETSGSMVNFVXIVTLYQ*IIKQHNTLIHLF*NLHQVH*LHYEIMRFSR-FKYIVSLQ 455 +SY T F ++ LY I + HL L ++ + Y + FS F Y ++L Sbjct: 220 ISYRTIHFSPLFTYLIHLYP-ISYRTIHFSHLVTYLIHLYPISYRTIHFSPLFTYRINL- 277 Query: 456 IIHNIIWQVIHVDCLCILIVFLFQIATFXNHYATRCLYILYQY 584 + I ++ IH L ++ L+ I+ H++ Y++ Y Sbjct: 278 --YPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLLTYLINLY 318 >SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40) Length = 935 Score = 29.1 bits (62), Expect = 3.3 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = +3 Query: 369 HLF*NLHQVH*LHYEIMRFSRFKYIVSLQIIHNIIWQVIHVDCLCILIVFLFQIATFXNH 548 HLF ++QVH Y ++ S + V + +I + +I LIV L IA + NH Sbjct: 373 HLFFTVYQVHTHTYSLVPGSYSRLTVLFRFERSIGFFLIQTYIPAYLIVMLSWIAFWINH 432 Query: 549 YAT 557 +T Sbjct: 433 TST 435 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,148,462 Number of Sequences: 59808 Number of extensions: 375071 Number of successful extensions: 764 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 758 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1669334250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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