Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C10
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 505 IHKQSTWITCHIMLC 461
           IH    W+TC ++ C
Sbjct: 106 IHLCKLWLTCDVLCC 120


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 505 IHKQSTWITCHIMLC 461
           IH    W+TC ++ C
Sbjct: 106 IHLCKLWLTCDVLCC 120


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 444 VSLQIIHNIIWQVIHVDCLCILIVFLFQIATFXNHYAT 557
           +S ++  NI + V       ILIV L  ++ + NH AT
Sbjct: 233 LSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEAT 270


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 505 IHKQSTWITCHIMLC 461
           IH    W+TC ++ C
Sbjct: 106 IHLCKLWLTCDVLCC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,502
Number of Sequences: 438
Number of extensions: 3416
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)