Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C08
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0585 + 4332352-4332445,4332552-4332667                           58   2e-09
06_03_0967 - 26395537-26396590,26400918-26401111                       47   6e-06
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    28   2.9  
06_01_0763 + 5712466-5712721,5714302-5715743                           28   2.9  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    27   5.1  

>02_01_0585 + 4332352-4332445,4332552-4332667
          Length = 69

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +2

Query: 92  MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLI 262
           MD +   V+P ++FAKDS+RL +RC KPDRKEF K+A  TA            VKLI
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLI 57


>06_03_0967 - 26395537-26396590,26400918-26401111
          Length = 415

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = +2

Query: 92  MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIA 202
           MD I   V+P ++FAKDS+RL +RC KPDRK  +++A
Sbjct: 1   MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGRERLA 37


>08_01_0649 +
           5607234-5608397,5609358-5609513,5609598-5609796,
           5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 292 ADNYVINGDMNQLYKESNEAHDAKSDGCCN--GNLLEFFPIRFCASSX*SDGVLSELLAR 119
           AD Y  NGD    Y+ +   HD+ + G  N  GNL   FP++    +   +G L  LL R
Sbjct: 338 ADEYSSNGDPGDEYRGNYVNHDSANYGRANKFGNL--NFPVKSIVDASAHEGEL--LLRR 393

Query: 118 LDE 110
           L E
Sbjct: 394 LLE 396


>06_01_0763 + 5712466-5712721,5714302-5715743
          Length = 565

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 202 HCNSHRILHHGLHWILCKADSY 267
           +C+ HR   H + W++ + DSY
Sbjct: 280 YCDDHRQFLHRVQWVILRTDSY 301


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -2

Query: 148 DGVLSELLARLDEFCDLIHY*INNSTIVLVV 56
           DGV + LL  LDEF  LIH    NS I   V
Sbjct: 369 DGVGTVLLQILDEFLQLIHIIFCNSDICCTV 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,558,692
Number of Sequences: 37544
Number of extensions: 154585
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)