BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C08 (443 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z74031-7|CAA98458.1| 68|Caenorhabditis elegans Hypothetical pr... 71 3e-13 U53785-1|AAC47274.1| 68|Caenorhabditis elegans Sec61p gamma ho... 71 3e-13 >Z74031-7|CAA98458.1| 68|Caenorhabditis elegans Hypothetical protein F32D8.6 protein. Length = 68 Score = 71.3 bits (167), Expect = 3e-13 Identities = 33/58 (56%), Positives = 39/58 (67%) Frame = +2 Query: 92 MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIH 265 MDQ +EP +QF+KDS RL +RCTKPDRKE+QKIA+ATA VKLIH Sbjct: 1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIH 58 >U53785-1|AAC47274.1| 68|Caenorhabditis elegans Sec61p gamma homolog protein. Length = 68 Score = 71.3 bits (167), Expect = 3e-13 Identities = 33/58 (56%), Positives = 39/58 (67%) Frame = +2 Query: 92 MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIH 265 MDQ +EP +QF+KDS RL +RCTKPDRKE+QKIA+ATA VKLIH Sbjct: 1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIH 58 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,452,899 Number of Sequences: 27780 Number of extensions: 142032 Number of successful extensions: 196 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 193 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 767282256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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