Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C08
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50460.1 68418.m06248 protein transport protein SEC61 gamma s...    60   7e-10
At4g24920.1 68417.m03568 protein transport protein SEC61 gamma s...    60   7e-10
At3g48570.1 68416.m05303 protein transport protein SEC61 gamma s...    54   4e-08
At4g29200.1 68417.m04177 hypothetical protein                          27   7.5  
At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...    26   10.0 

>At5g50460.1 68418.m06248 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 30/57 (52%), Positives = 35/57 (61%)
 Frame = +2

Query: 92  MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLI 262
           MD I   V+P + FAKDSIRL +RC KPDRKEF K+A+ TA            VKLI
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLI 57


>At4g24920.1 68417.m03568 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 30/57 (52%), Positives = 35/57 (61%)
 Frame = +2

Query: 92  MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLI 262
           MD I   V+P + FAKDSIRL +RC KPDRKEF K+A+ TA            VKLI
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLI 57


>At3g48570.1 68416.m05303 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 25/57 (43%), Positives = 34/57 (59%)
 Frame = +2

Query: 92  MDQIAKFVEPGKQFAKDSIRLXRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLI 262
           M+ I   ++P + FAK S+RL +RC KPDRKEF K+A+ TA            VKL+
Sbjct: 1   MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLV 57


>At4g29200.1 68417.m04177 hypothetical protein
          Length = 457

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 441 FYKNQIIYLFMKLYNTVCC 385
           F     I+LFM L NTVCC
Sbjct: 420 FKSMHFIFLFMVLGNTVCC 438


>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 76  NY*FNNGSDRKIRRAWQAIR 135
           NY FN+GSD  +  +W  +R
Sbjct: 425 NYFFNSGSDMSVGTSWNILR 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,809,215
Number of Sequences: 28952
Number of extensions: 127035
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)