Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C07
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                135   3e-32
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)                    29   3.3  
SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)                      28   5.8  
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           28   7.6  
SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)                       28   7.6  
SB_37463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  135 bits (326), Expect = 3e-32
 Identities = 66/106 (62%), Positives = 78/106 (73%)
 Frame = +3

Query: 336 ILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILXGIRYH 515
           I+ +DL  F+E  +P  KK+SK  LGV D K+GAAI E+L I C   G + E+L GIR H
Sbjct: 3   IIHDDLKAFVEANVPTGKKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMH 62

Query: 516 FHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653
           F  +IKGLT    S AQLGLGHSYSRA+VKFN+HRVDNMIIQSIAL
Sbjct: 63  FDKMIKGLTGAMASKAQLGLGHSYSRAKVKFNIHRVDNMIIQSIAL 108


>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1677

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 254  CCCDFNSFPTTQVGDRCFGK 313
            CCC    FP+ +  D+CF K
Sbjct: 1198 CCCHGREFPSARTSDKCFLK 1217


>SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)
          Length = 420

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 452 PGNSVHAYRSSPGDFXRHTLSLPLAHQRPYPQSMQCGTAWSW 577
           P N++  YRS P +  R+  S+P    R Y  + + G  + W
Sbjct: 348 PENAMRYYRSIPENAMRYYRSVPEIAMRYYRSATEIGMRYFW 389


>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 400 NAHSVYWIPS*EQPSARPWKFSARIQEQSRRF*XAYVITSTRSSKALPSKHAVWHSLVLA 579
           ++H +  + +   PSA  WKF+      S      Y   + R  + +P        L L 
Sbjct: 411 SSHMICAVATQGDPSADQWKFNGNYDRNSIVRQVLYQAPAARYVRVVPISETGSKCLRLE 470

Query: 580 THTHELVSSSMF--TEWT 627
            + H L S + +  +EWT
Sbjct: 471 LYGHRLGSGTAYSDSEWT 488


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 491 DFXRHTLSLPLAHQRPYPQSMQCGTAWSWPLILTSSCQVQCS 616
           ++   T SL     RP  Q  QC   +S PL L    Q  C+
Sbjct: 397 EYGTKTASLTAEESRPKHQCHQCNKGYSTPLGLAKHQQFHCN 438


>SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 306 LENINAVSEGILPEDLNLFLEGGLPK 383
           L      + G+L EDL +  EGGLPK
Sbjct: 140 LRKTRVYTRGLLGEDLRMRTEGGLPK 165


>SB_37463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 RWSSKEEKTIKMHTRCTGSQARSSHQRG 451
           RWSS ++KTIK  +     + RS  Q G
Sbjct: 3   RWSSTKKKTIKKKSPLAWDRTRSEEQNG 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,421,583
Number of Sequences: 59808
Number of extensions: 427764
Number of successful extensions: 3369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3369
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)