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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C07
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil...   164   5e-41
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...   159   1e-39
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    97   7e-21
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    92   3e-19
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron...    58   4e-09
At5g61810.1 68418.m07756 mitochondrial substrate carrier family ...    29   2.0  
At2g25660.1 68415.m03075 expressed protein                             29   2.0  
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila...    29   2.0  
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila...    29   2.0  
At1g73210.2 68414.m08473 expressed protein                             29   3.6  
At1g73210.1 68414.m08472 expressed protein                             29   3.6  
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1...    28   6.2  
At4g27460.1 68417.m03946 CBS domain-containing protein                 27   8.2  
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b...    27   8.2  

>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 522

 Score =  164 bits (398), Expect = 5e-41
 Identities = 86/172 (50%), Positives = 113/172 (65%), Gaps = 2/172 (1%)
 Frame = +3

Query: 138 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 317
           YV++E S+G+ LF V   +E+      V  SV+DL RF  VV L AF P +SA+ AL  +
Sbjct: 4   YVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDALNQV 63

Query: 318 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 491
           NAVSEG++ ++L  FLE  LPK K  K+ K +LG+ +PKLG+ I EA +I C     V E
Sbjct: 64  NAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLE 123

Query: 492 ILXGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSI 647
           +L G+R HF   IK L       +QLGL HSYSRA+VKFNV+RVDNM+IQ+I
Sbjct: 124 LLRGVRQHFDRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAI 175


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score =  159 bits (387), Expect = 1e-39
 Identities = 87/174 (50%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
 Frame = +3

Query: 132 KFYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALE 311
           K Y+L E  +G+ LF     +E+      V  SV+DL RF  VV L AF P +SA+ AL 
Sbjct: 2   KIYLLSESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDALN 61

Query: 312 NINAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAV 485
            INAVSEG + ++L  FLE  LPK K  K+ K +LGV +PK+G+ I EA +I C     V
Sbjct: 62  QINAVSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFV 121

Query: 486 PEILXGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSI 647
            E+L G+R HF   IK L       AQLGL HSYSRA+VKFNV+RVDNM+IQ+I
Sbjct: 122 HELLRGVRQHFDRFIKDLKPGDLEKAQLGLAHSYSRAKVKFNVNRVDNMVIQAI 175


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 65/171 (38%), Positives = 90/171 (52%)
 Frame = +3

Query: 141 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 320
           VL+E +AGFALF+V +  ++A      +E  T       +V L AF+   +   ALE + 
Sbjct: 4   VLYETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAVA 62

Query: 321 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILX 500
            + EG   + L  FL+            TL V D KLG  I E L+I C H  AV E+L 
Sbjct: 63  KLLEGAPSKGLRKFLKANCQGE------TLAVADSKLGNVIKEKLKIDCIHNNAVMELLR 116

Query: 501 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653
           G+R  F  LI GL  +  +   LGL HS +R ++KF+  +VD MIIQ+I L
Sbjct: 117 GVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGL 167


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 61/171 (35%), Positives = 86/171 (50%)
 Frame = +3

Query: 141 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 320
           +LFE   GFA+F+V    +L+  +  +    +  +    +V L+AF    +   ALE + 
Sbjct: 3   ILFETPGGFAIFKVLNEGKLSN-VEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAVA 61

Query: 321 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILX 500
            + EG   + L  FL+            TL V D KLG  I E L+I C H  AV E+L 
Sbjct: 62  KLLEGTPSKGLRKFLKANCVGE------TLAVADSKLGNIIKEKLKIVCVHNNAVMELLR 115

Query: 501 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653
           GIR     LI GL  +      LGL HS +R ++KF+  +VD MIIQ+I L
Sbjct: 116 GIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGL 166


>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 445

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 33/82 (40%), Positives = 45/82 (54%)
 Frame = +3

Query: 408 LGVLDPKLGAAISEALEIQCTHTGAVPEILXGIRYHFHSLIKGLTLKACSVAQLGLGHSY 587
           L V DPKLG  I+E L+I+C H  AV E+L G+R     L+ GL     +   L L H  
Sbjct: 57  LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116

Query: 588 SRARVKFNVHRVDNMIIQSIAL 653
           +R ++K    +   MII SI+L
Sbjct: 117 ARYKLKITSDK--TMIILSISL 136


>At5g61810.1 68418.m07756 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier, Oryctolagus cuniculus,GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 478

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
 Frame = +3

Query: 192 EELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAVSEGILPEDL--NLFL 365
           EELA+F+  V++    +  F      +   PH++ I   ENI    E +   D+     +
Sbjct: 138 EELASFMEHVDKDNNGIITFEEWRDFLLLNPHEATI---ENIYHHWERVCLIDIGEQAVI 194

Query: 366 EGGLPKRKKRSKCTL-----GVLDPKLGAAISE---ALEIQCTHTGAVPEI 494
             G+    +RSK  L     G +     A +     AL++Q T+ G VP I
Sbjct: 195 PDGISAHAQRSKLLLAGGIAGAVSRTATAPLDRLKVALQVQRTNLGVVPTI 245


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 276  FQPHKSAIVALENINAVSEGILPEDLNLF--LEGGLPKRKKRSKCTLGVLDPKLGAAISE 449
            FQP +SA + + N   + E  L     L    E  L  +K+R    L V+ PK    + E
Sbjct: 1176 FQPQQSATLEIRNF-PLDELELASLRGLIQKAEIQLNLQKRRGHGLLSVIRPKFSGVLGE 1234

Query: 450  ALEIQCTHTGAVPEILXG 503
            AL++    +G V  +L G
Sbjct: 1235 ALDVAVRWSGDVCFMLSG 1252


>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 276 FQPHKSAIVALENINAVSEGILPEDLNL-FLEGGLPKRKKRSKCTLGVLDPKLGAAISE 449
           F P     ++ E   AV  GI+ E+LN  F+ G    R  + K +LG ++ K  +A  E
Sbjct: 216 FDPLLHEAISREESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274


>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 276 FQPHKSAIVALENINAVSEGILPEDLNL-FLEGGLPKRKKRSKCTLGVLDPKLGAAISE 449
           F P     ++ E   AV  GI+ E+LN  F+ G    R  + K +LG ++ K  +A  E
Sbjct: 216 FDPLLHEAISREESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274


>At1g73210.2 68414.m08473 expressed protein 
          Length = 312

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 510 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 406
           NV + K PGL+     +   P  W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 205


>At1g73210.1 68414.m08472 expressed protein 
          Length = 314

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 510 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 406
           NV + K PGL+     +   P  W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 207


>At4g16680.1 68417.m02519 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 883

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 505 YVITSTRSSKALPSKHAVWHSLVLATHTHELVSSSMFTEW 624
           YV  ++    A PSK  V+H LVL T  +   ++ M  EW
Sbjct: 791 YVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTTEMKPEW 830


>At4g27460.1 68417.m03946 CBS domain-containing protein 
          Length = 391

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 198 LAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSA---IVALENINAVSEGILPED 350
           +AAF P    S++DL   N+  T++A   H SA   + A+ N  AV   +   D
Sbjct: 172 IAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVD 225


>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
           DNA-binding family protein contains similarity to
           SWI/SNF complex 170 KDa subunit [Homo sapiens]
           gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
           SWIRM domain, PF00249: Myb-like DNA-binding domain
          Length = 807

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 219 VEESVTDLQRFNAVVTLIAFQPHKS--AIVALENINAVSE 332
           VE+S + +  F AVV  +  +PH S  A+VA E    + E
Sbjct: 74  VEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGE 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,042
Number of Sequences: 28952
Number of extensions: 285836
Number of successful extensions: 711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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