Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C07
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 164 5e-41
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 159 1e-39
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 97 7e-21
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 92 3e-19
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 58 4e-09
At5g61810.1 68418.m07756 mitochondrial substrate carrier family ... 29 2.0
At2g25660.1 68415.m03075 expressed protein 29 2.0
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila... 29 2.0
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila... 29 2.0
At1g73210.2 68414.m08473 expressed protein 29 3.6
At1g73210.1 68414.m08472 expressed protein 29 3.6
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 28 6.2
At4g27460.1 68417.m03946 CBS domain-containing protein 27 8.2
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 27 8.2
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 164 bits (398), Expect = 5e-41
Identities = 86/172 (50%), Positives = 113/172 (65%), Gaps = 2/172 (1%)
Frame = +3
Query: 138 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 317
YV++E S+G+ LF V +E+ V SV+DL RF VV L AF P +SA+ AL +
Sbjct: 4 YVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDALNQV 63
Query: 318 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 491
NAVSEG++ ++L FLE LPK K K+ K +LG+ +PKLG+ I EA +I C V E
Sbjct: 64 NAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLE 123
Query: 492 ILXGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSI 647
+L G+R HF IK L +QLGL HSYSRA+VKFNV+RVDNM+IQ+I
Sbjct: 124 LLRGVRQHFDRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAI 175
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 159 bits (387), Expect = 1e-39
Identities = 87/174 (50%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Frame = +3
Query: 132 KFYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALE 311
K Y+L E +G+ LF +E+ V SV+DL RF VV L AF P +SA+ AL
Sbjct: 2 KIYLLSESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDALN 61
Query: 312 NINAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAV 485
INAVSEG + ++L FLE LPK K K+ K +LGV +PK+G+ I EA +I C V
Sbjct: 62 QINAVSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFV 121
Query: 486 PEILXGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSI 647
E+L G+R HF IK L AQLGL HSYSRA+VKFNV+RVDNM+IQ+I
Sbjct: 122 HELLRGVRQHFDRFIKDLKPGDLEKAQLGLAHSYSRAKVKFNVNRVDNMVIQAI 175
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 97.5 bits (232), Expect = 7e-21
Identities = 65/171 (38%), Positives = 90/171 (52%)
Frame = +3
Query: 141 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 320
VL+E +AGFALF+V + ++A +E T +V L AF+ + ALE +
Sbjct: 4 VLYETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAVA 62
Query: 321 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILX 500
+ EG + L FL+ TL V D KLG I E L+I C H AV E+L
Sbjct: 63 KLLEGAPSKGLRKFLKANCQGE------TLAVADSKLGNVIKEKLKIDCIHNNAVMELLR 116
Query: 501 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653
G+R F LI GL + + LGL HS +R ++KF+ +VD MIIQ+I L
Sbjct: 117 GVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGL 167
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 92.3 bits (219), Expect = 3e-19
Identities = 61/171 (35%), Positives = 86/171 (50%)
Frame = +3
Query: 141 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 320
+LFE GFA+F+V +L+ + + + + +V L+AF + ALE +
Sbjct: 3 ILFETPGGFAIFKVLNEGKLSN-VEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAVA 61
Query: 321 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILX 500
+ EG + L FL+ TL V D KLG I E L+I C H AV E+L
Sbjct: 62 KLLEGTPSKGLRKFLKANCVGE------TLAVADSKLGNIIKEKLKIVCVHNNAVMELLR 115
Query: 501 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653
GIR LI GL + LGL HS +R ++KF+ +VD MIIQ+I L
Sbjct: 116 GIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGL 166
>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 445
Score = 58.4 bits (135), Expect = 4e-09
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +3
Query: 408 LGVLDPKLGAAISEALEIQCTHTGAVPEILXGIRYHFHSLIKGLTLKACSVAQLGLGHSY 587
L V DPKLG I+E L+I+C H AV E+L G+R L+ GL + L L H
Sbjct: 57 LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116
Query: 588 SRARVKFNVHRVDNMIIQSIAL 653
+R ++K + MII SI+L
Sbjct: 117 ARYKLKITSDK--TMIILSISL 136
>At5g61810.1 68418.m07756 mitochondrial substrate carrier family
protein similar to peroxisomal Ca-dependent solute
carrier, Oryctolagus cuniculus,GI:2352427; contains
INTERPRO:IPR001993 Mitochondrial substrate carrier
family, INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 478
Score = 29.5 bits (63), Expect = 2.0
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Frame = +3
Query: 192 EELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAVSEGILPEDL--NLFL 365
EELA+F+ V++ + F + PH++ I ENI E + D+ +
Sbjct: 138 EELASFMEHVDKDNNGIITFEEWRDFLLLNPHEATI---ENIYHHWERVCLIDIGEQAVI 194
Query: 366 EGGLPKRKKRSKCTL-----GVLDPKLGAAISE---ALEIQCTHTGAVPEI 494
G+ +RSK L G + A + AL++Q T+ G VP I
Sbjct: 195 PDGISAHAQRSKLLLAGGIAGAVSRTATAPLDRLKVALQVQRTNLGVVPTI 245
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 276 FQPHKSAIVALENINAVSEGILPEDLNLF--LEGGLPKRKKRSKCTLGVLDPKLGAAISE 449
FQP +SA + + N + E L L E L +K+R L V+ PK + E
Sbjct: 1176 FQPQQSATLEIRNF-PLDELELASLRGLIQKAEIQLNLQKRRGHGLLSVIRPKFSGVLGE 1234
Query: 450 ALEIQCTHTGAVPEILXG 503
AL++ +G V +L G
Sbjct: 1235 ALDVAVRWSGDVCFMLSG 1252
>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform b [Chlamydomonas
reinhardtii] GI:15384279; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 279
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 276 FQPHKSAIVALENINAVSEGILPEDLNL-FLEGGLPKRKKRSKCTLGVLDPKLGAAISE 449
F P ++ E AV GI+ E+LN F+ G R + K +LG ++ K +A E
Sbjct: 216 FDPLLHEAISREESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274
>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform b [Chlamydomonas
reinhardtii] GI:15384279; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 279
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 276 FQPHKSAIVALENINAVSEGILPEDLNL-FLEGGLPKRKKRSKCTLGVLDPKLGAAISE 449
F P ++ E AV GI+ E+LN F+ G R + K +LG ++ K +A E
Sbjct: 216 FDPLLHEAISREESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 510 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 406
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 205
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 510 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 406
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 207
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 505 YVITSTRSSKALPSKHAVWHSLVLATHTHELVSSSMFTEW 624
YV ++ A PSK V+H LVL T + ++ M EW
Sbjct: 791 YVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTTEMKPEW 830
>At4g27460.1 68417.m03946 CBS domain-containing protein
Length = 391
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 198 LAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSA---IVALENINAVSEGILPED 350
+AAF P S++DL N+ T++A H SA + A+ N AV + D
Sbjct: 172 IAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVD 225
>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 807
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 219 VEESVTDLQRFNAVVTLIAFQPHKS--AIVALENINAVSE 332
VE+S + + F AVV + +PH S A+VA E + E
Sbjct: 74 VEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGE 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,042
Number of Sequences: 28952
Number of extensions: 285836
Number of successful extensions: 711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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