BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C07 (655 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 164 5e-41 At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 159 1e-39 At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 97 7e-21 At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 92 3e-19 At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 58 4e-09 At5g61810.1 68418.m07756 mitochondrial substrate carrier family ... 29 2.0 At2g25660.1 68415.m03075 expressed protein 29 2.0 At1g36390.2 68414.m04521 co-chaperone grpE family protein simila... 29 2.0 At1g36390.1 68414.m04520 co-chaperone grpE family protein simila... 29 2.0 At1g73210.2 68414.m08473 expressed protein 29 3.6 At1g73210.1 68414.m08472 expressed protein 29 3.6 At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 28 6.2 At4g27460.1 68417.m03946 CBS domain-containing protein 27 8.2 At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 27 8.2 >At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar to XNop56 protein [Xenopus laevis] GI:14799394; contains Pfam profile PF01798: Putative snoRNA binding domain Length = 522 Score = 164 bits (398), Expect = 5e-41 Identities = 86/172 (50%), Positives = 113/172 (65%), Gaps = 2/172 (1%) Frame = +3 Query: 138 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 317 YV++E S+G+ LF V +E+ V SV+DL RF VV L AF P +SA+ AL + Sbjct: 4 YVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDALNQV 63 Query: 318 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 491 NAVSEG++ ++L FLE LPK K K+ K +LG+ +PKLG+ I EA +I C V E Sbjct: 64 NAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLE 123 Query: 492 ILXGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSI 647 +L G+R HF IK L +QLGL HSYSRA+VKFNV+RVDNM+IQ+I Sbjct: 124 LLRGVRQHFDRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAI 175 >At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar to XNop56 protein [Xenopus laevis] GI:14799394; contains Pfam profile PF01798: Putative snoRNA binding domain Length = 499 Score = 159 bits (387), Expect = 1e-39 Identities = 87/174 (50%), Positives = 110/174 (63%), Gaps = 2/174 (1%) Frame = +3 Query: 132 KFYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALE 311 K Y+L E +G+ LF +E+ V SV+DL RF VV L AF P +SA+ AL Sbjct: 2 KIYLLSESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDALN 61 Query: 312 NINAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAV 485 INAVSEG + ++L FLE LPK K K+ K +LGV +PK+G+ I EA +I C V Sbjct: 62 QINAVSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFV 121 Query: 486 PEILXGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSI 647 E+L G+R HF IK L AQLGL HSYSRA+VKFNV+RVDNM+IQ+I Sbjct: 122 HELLRGVRQHFDRFIKDLKPGDLEKAQLGLAHSYSRAKVKFNVNRVDNMVIQAI 175 >At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain Length = 533 Score = 97.5 bits (232), Expect = 7e-21 Identities = 65/171 (38%), Positives = 90/171 (52%) Frame = +3 Query: 141 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 320 VL+E +AGFALF+V + ++A +E T +V L AF+ + ALE + Sbjct: 4 VLYETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAVA 62 Query: 321 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILX 500 + EG + L FL+ TL V D KLG I E L+I C H AV E+L Sbjct: 63 KLLEGAPSKGLRKFLKANCQGE------TLAVADSKLGNVIKEKLKIDCIHNNAVMELLR 116 Query: 501 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653 G+R F LI GL + + LGL HS +R ++KF+ +VD MIIQ+I L Sbjct: 117 GVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGL 167 >At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain Length = 533 Score = 92.3 bits (219), Expect = 3e-19 Identities = 61/171 (35%), Positives = 86/171 (50%) Frame = +3 Query: 141 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 320 +LFE GFA+F+V +L+ + + + + +V L+AF + ALE + Sbjct: 3 ILFETPGGFAIFKVLNEGKLSN-VEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAVA 61 Query: 321 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILX 500 + EG + L FL+ TL V D KLG I E L+I C H AV E+L Sbjct: 62 KLLEGTPSKGLRKFLKANCVGE------TLAVADSKLGNIIKEKLKIVCVHNNAVMELLR 115 Query: 501 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIAL 653 GIR LI GL + LGL HS +R ++KF+ +VD MIIQ+I L Sbjct: 116 GIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGL 166 >At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain Length = 445 Score = 58.4 bits (135), Expect = 4e-09 Identities = 33/82 (40%), Positives = 45/82 (54%) Frame = +3 Query: 408 LGVLDPKLGAAISEALEIQCTHTGAVPEILXGIRYHFHSLIKGLTLKACSVAQLGLGHSY 587 L V DPKLG I+E L+I+C H AV E+L G+R L+ GL + L L H Sbjct: 57 LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116 Query: 588 SRARVKFNVHRVDNMIIQSIAL 653 +R ++K + MII SI+L Sbjct: 117 ARYKLKITSDK--TMIILSISL 136 >At5g61810.1 68418.m07756 mitochondrial substrate carrier family protein similar to peroxisomal Ca-dependent solute carrier, Oryctolagus cuniculus,GI:2352427; contains INTERPRO:IPR001993 Mitochondrial substrate carrier family, INTERPRO:IPR002048 calcium-binding EF-hand domain Length = 478 Score = 29.5 bits (63), Expect = 2.0 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%) Frame = +3 Query: 192 EELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAVSEGILPEDL--NLFL 365 EELA+F+ V++ + F + PH++ I ENI E + D+ + Sbjct: 138 EELASFMEHVDKDNNGIITFEEWRDFLLLNPHEATI---ENIYHHWERVCLIDIGEQAVI 194 Query: 366 EGGLPKRKKRSKCTL-----GVLDPKLGAAISE---ALEIQCTHTGAVPEI 494 G+ +RSK L G + A + AL++Q T+ G VP I Sbjct: 195 PDGISAHAQRSKLLLAGGIAGAVSRTATAPLDRLKVALQVQRTNLGVVPTI 245 >At2g25660.1 68415.m03075 expressed protein Length = 2146 Score = 29.5 bits (63), Expect = 2.0 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +3 Query: 276 FQPHKSAIVALENINAVSEGILPEDLNLF--LEGGLPKRKKRSKCTLGVLDPKLGAAISE 449 FQP +SA + + N + E L L E L +K+R L V+ PK + E Sbjct: 1176 FQPQQSATLEIRNF-PLDELELASLRGLIQKAEIQLNLQKRRGHGLLSVIRPKFSGVLGE 1234 Query: 450 ALEIQCTHTGAVPEILXG 503 AL++ +G V +L G Sbjct: 1235 ALDVAVRWSGDVCFMLSG 1252 >At1g36390.2 68414.m04521 co-chaperone grpE family protein similar to co-chaperone CGE1 precursor isoform b [Chlamydomonas reinhardtii] GI:15384279; contains Pfam profile PF01025: co-chaperone GrpE Length = 279 Score = 29.5 bits (63), Expect = 2.0 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 276 FQPHKSAIVALENINAVSEGILPEDLNL-FLEGGLPKRKKRSKCTLGVLDPKLGAAISE 449 F P ++ E AV GI+ E+LN F+ G R + K +LG ++ K +A E Sbjct: 216 FDPLLHEAISREESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274 >At1g36390.1 68414.m04520 co-chaperone grpE family protein similar to co-chaperone CGE1 precursor isoform b [Chlamydomonas reinhardtii] GI:15384279; contains Pfam profile PF01025: co-chaperone GrpE Length = 279 Score = 29.5 bits (63), Expect = 2.0 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 276 FQPHKSAIVALENINAVSEGILPEDLNL-FLEGGLPKRKKRSKCTLGVLDPKLGAAISE 449 F P ++ E AV GI+ E+LN F+ G R + K +LG ++ K +A E Sbjct: 216 FDPLLHEAISREESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274 >At1g73210.2 68414.m08473 expressed protein Length = 312 Score = 28.7 bits (61), Expect = 3.6 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 510 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 406 NV + K PGL+ + P W+ +AW P++ + Sbjct: 172 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 205 >At1g73210.1 68414.m08472 expressed protein Length = 314 Score = 28.7 bits (61), Expect = 3.6 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 510 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 406 NV + K PGL+ + P W+ +AW P++ + Sbjct: 174 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 207 >At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain Length = 883 Score = 27.9 bits (59), Expect = 6.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 505 YVITSTRSSKALPSKHAVWHSLVLATHTHELVSSSMFTEW 624 YV ++ A PSK V+H LVL T + ++ M EW Sbjct: 791 YVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTTEMKPEW 830 >At4g27460.1 68417.m03946 CBS domain-containing protein Length = 391 Score = 27.5 bits (58), Expect = 8.2 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +3 Query: 198 LAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSA---IVALENINAVSEGILPED 350 +AAF P S++DL N+ T++A H SA + A+ N AV + D Sbjct: 172 IAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVD 225 >At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-binding family protein contains similarity to SWI/SNF complex 170 KDa subunit [Homo sapiens] gi|1549241|gb|AAC50694; contains Pfam domain PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain Length = 807 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 219 VEESVTDLQRFNAVVTLIAFQPHKS--AIVALENINAVSE 332 VE+S + + F AVV + +PH S A+VA E + E Sbjct: 74 VEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGE 113 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,888,042 Number of Sequences: 28952 Number of extensions: 285836 Number of successful extensions: 711 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 706 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1363910256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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