BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C06 (650 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 70 3e-13 SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 53 3e-08 SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 41 2e-04 SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.012 SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 30 0.25 SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.3 SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 1.8 SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.3 SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.4 SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 7.2 SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 9.5 SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 9.5 >SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein Stg1|Schizosaccharomyces pombe|chr 1|||Manual Length = 174 Score = 69.7 bits (163), Expect = 3e-13 Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 5/118 (4%) Frame = +2 Query: 308 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 484 L+ G +LC++ I+ S+M F MENI+AF+ A+Q+ VP+Q+ FQT DL+ Sbjct: 31 LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89 Query: 485 ERQNLNSVVICLQSLGRKAGTY--GK-PSIGPKEAEKNVRNFSEEQLRA-GQGVISLQ 646 ER+N V+ + S R A GK +GPK AEK R FS +Q R +GV SLQ Sbjct: 90 ERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQ 147 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 53.2 bits (122), Expect = 3e-08 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = +2 Query: 272 TPQGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGV 448 T G F + L++G +L L P+ +IK ++ + F+ +NIN FL+ +G+ Sbjct: 57 TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGL 116 Query: 449 PAQETFQTVDLWERQNLNSVVICLQSL 529 P F+ D++E +NL V+ C+ +L Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHAL 143 >SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 962 Score = 40.7 bits (91), Expect = 2e-04 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +2 Query: 284 DMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQE 460 ++D+F + L +G +LC+LA +P + ++ + +NAF +G+ Sbjct: 84 NLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPF 143 Query: 461 TFQTVDLWERQNLNSVVICLQSL 529 F+T DL R N+ V+ CL +L Sbjct: 144 RFETKDLVRRFNIPKVIYCLHAL 166 >SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Manual Length = 614 Score = 34.7 bits (76), Expect = 0.012 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Frame = +2 Query: 296 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 445 F++ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201 Score = 30.3 bits (65), Expect = 0.25 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%) Frame = +2 Query: 293 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 445 +F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464 >SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 991 Score = 30.3 bits (65), Expect = 0.25 Identities = 19/89 (21%), Positives = 35/89 (39%) Frame = +2 Query: 365 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 544 ++ +S A E + AF+E A+Q G+P E W+ + + +L + Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177 Query: 545 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 631 Y + +NVR + G+G Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206 >SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1274 Score = 27.9 bits (59), Expect = 1.3 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +1 Query: 421 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 552 P+ + V CTG G+ V +S D L +TG+ G L+ Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159 >SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 507 Score = 27.5 bits (58), Expect = 1.8 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = +1 Query: 256 TGEPENTSGRYGQLLRSA*RRHSSVQASQQHPPEH--DQ-KDQHIVDGLQVHGEYQRFPR 426 + EP+ G L +S++ S HP + DQ D+ VDGL + Y PR Sbjct: 253 SSEPKEKEEIVGSLEEEGTDESASLEDSLSHPTKSILDQLADKMEVDGLNNNSNYSATPR 312 Query: 427 SRKTVG 444 +R G Sbjct: 313 TRVVNG 318 >SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 27.1 bits (57), Expect = 2.3 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Frame = +2 Query: 308 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 484 LK+ T + L+++IHPN +++ S +N+ N E + L + + VD + Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57 Query: 485 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 598 E+ L + I +++ TY K S+G +N N Sbjct: 58 EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93 >SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1562 Score = 25.8 bits (54), Expect = 5.4 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Frame = +3 Query: 39 PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 215 P PP L S H +FT F+ L R+ + S RI +P D QI Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225 Query: 216 GAG 224 G Sbjct: 226 RTG 228 >SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 879 Score = 25.4 bits (53), Expect = 7.2 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = -2 Query: 457 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 344 L R+ LS +D++ L+G + C HV D+ Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104 >SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 Query: 169 LIWSLGCLPFRTNNNLINYLNK 104 LIW+ CL T+ +LI YL++ Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144 >SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 361 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 260 PVIIRIHSKDSWASSSLYLL 201 P IIR H +D W S + LL Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,887,058 Number of Sequences: 5004 Number of extensions: 61414 Number of successful extensions: 187 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 184 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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