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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C06
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    70   3e-13
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      53   3e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    41   2e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    35   0.012
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    30   0.25 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.3  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   1.8  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.4  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   7.2  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   9.5  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   9.5  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
 Frame = +2

Query: 308 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 484
           L+ G +LC++        I+    S+M F  MENI+AF+  A+Q+  VP+Q+ FQT DL+
Sbjct: 31  LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89

Query: 485 ERQNLNSVVICLQSLGRKAGTY--GK-PSIGPKEAEKNVRNFSEEQLRA-GQGVISLQ 646
           ER+N   V+  + S  R A     GK   +GPK AEK  R FS +Q R   +GV SLQ
Sbjct: 90  ERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQ 147


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +2

Query: 272 TPQGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGV 448
           T  G    F + L++G +L  L     P+ +IK   ++ + F+  +NIN FL+    +G+
Sbjct: 57  TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGL 116

Query: 449 PAQETFQTVDLWERQNLNSVVICLQSL 529
           P    F+  D++E +NL  V+ C+ +L
Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +2

Query: 284 DMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQE 460
           ++D+F + L +G +LC+LA   +P +         ++ +    +NAF      +G+    
Sbjct: 84  NLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPF 143

Query: 461 TFQTVDLWERQNLNSVVICLQSL 529
            F+T DL  R N+  V+ CL +L
Sbjct: 144 RFETKDLVRRFNIPKVIYCLHAL 166


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = +2

Query: 296 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 445
           F++  KDG +L KL N+  P+ I      K+ N   +  FKC+EN N  + +A+ +G
Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +2

Query: 293 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 445
           +F+  L+DG +L +  + I PN +  KK+N +       M FK +EN N  ++  +  G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 19/89 (21%), Positives = 35/89 (39%)
 Frame = +2

Query: 365 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 544
           ++  +S  A    E + AF+E A+Q G+P  E       W+   +      + +L +   
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177

Query: 545 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 631
            Y    +      +NVR    +    G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 421 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 552
           P+ +  V CTG G+      V   +S    D L +TG+ G  L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +1

Query: 256 TGEPENTSGRYGQLLRSA*RRHSSVQASQQHPPEH--DQ-KDQHIVDGLQVHGEYQRFPR 426
           + EP+      G L        +S++ S  HP +   DQ  D+  VDGL  +  Y   PR
Sbjct: 253 SSEPKEKEEIVGSLEEEGTDESASLEDSLSHPTKSILDQLADKMEVDGLNNNSNYSATPR 312

Query: 427 SRKTVG 444
           +R   G
Sbjct: 313 TRVVNG 318


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +2

Query: 308 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 484
           LK+ T +  L+++IHPN    +++ S      +N+ N   E  + L +      + VD +
Sbjct: 6   LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57

Query: 485 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 598
           E+  L +  I  +++     TY K S+G     +N  N
Sbjct: 58  EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +3

Query: 39  PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 215
           P  PP  L S H +FT          F+  L  R+ +   S   RI   +P  D  QI  
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225

Query: 216 GAG 224
             G
Sbjct: 226 RTG 228


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 457 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 344
           L R+  LS      +D++  L+G + C     HV  D+
Sbjct: 67  LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 169 LIWSLGCLPFRTNNNLINYLNK 104
           LIW+  CL   T+ +LI YL++
Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 260 PVIIRIHSKDSWASSSLYLL 201
           P IIR H +D W S  + LL
Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,058
Number of Sequences: 5004
Number of extensions: 61414
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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