Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C06
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 3e-28
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 3e-24
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 87 1e-17
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 73 2e-13
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 64 9e-11
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 3e-07
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 45 6e-05
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.050
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 35 0.066
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 35 0.066
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 34 0.087
SB_15403| Best HMM Match : CH (HMM E-Value=0) 32 0.35
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 29 2.5
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 29 2.5
SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20) 28 5.7
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26) 28 7.6
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 122 bits (293), Expect = 3e-28
Identities = 62/116 (53%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 469
D+ +EVLKDG +LC++AN + N+ KIN+S MAFK MEN FLE +GVP + FQ
Sbjct: 92 DDVHEVLKDGQVLCRVANKLGGNI--KINSSKMAFKMMENTGKFLEFCDTIGVPKTDMFQ 149
Query: 470 TVDLWERQNLNSVVICLQSLGRKAGTYGKP--SIGPKEAEKNVRNFSEEQLRAGQG 631
TVDL+E+QN+ V+ + +LGRKA + GK ++GPKEA N R F+EEQ RAGQG
Sbjct: 150 TVDLYEKQNMPGVINGIHALGRKAHSTGKTCLALGPKEASANPREFTEEQRRAGQG 205
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 109 bits (261), Expect = 3e-24
Identities = 55/123 (44%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Frame = +2
Query: 281 GDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLE-AARQLGVPAQ 457
G +D ++ LKDG +LC+LAN + ++ KIN M FK MENI FL LGV
Sbjct: 453 GGVDTVHQTLKDGQVLCRLANRLGGDL--KINQQKMPFKQMENIGNFLSFIENNLGVAKN 510
Query: 458 ETFQTVDLWERQNLNSVVICLQSLGRKAGTYGK--PSIGPKEAEKNVRNFSEEQLRAGQG 631
+ FQTVDL+E+ N+ +V+ C+ ++GR+A + GK P +GPKE+ KN R F+E QL G+
Sbjct: 511 DLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGKDVPQLGPKESTKNPRQFTERQLNEGKT 570
Query: 632 VIS 640
+I+
Sbjct: 571 IIN 573
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 87.0 bits (206), Expect = 1e-17
Identities = 49/116 (42%), Positives = 71/116 (61%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 469
D+ +VLKDG +L +LA + + K+N +M FK MENI FL LGV + + FQ
Sbjct: 50 DDVQKVLKDGKILARLAIKLGAKI--KVNEQNMPFKQMENIGNFLSHCGHLGVASGDQFQ 107
Query: 470 TVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRNFSEEQLRAGQGVI 637
T DL++ N+ S + ++ L P++GPKEAE NVR F+EEQLRAG+ ++
Sbjct: 108 TADLYDNANMTSCQL-IKDL-------DIPTLGPKEAEANVREFTEEQLRAGESIL 155
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 169 GFAAEAQRKINSKYSEELAHESLEWIRMITGE 264
G +A A RKI KY + E+ WI + GE
Sbjct: 9 GMSAAANRKILEKYDPQQEEEARIWIEAVLGE 40
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/73 (47%), Positives = 45/73 (61%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 469
D+F LK G +LCKLAN I P IKKIN + M F MENI F + GV +Q F
Sbjct: 88 DDFQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFV 147
Query: 470 TVDLWERQNLNSV 508
T+DL+E +N++ V
Sbjct: 148 TIDLFEGKNMHQV 160
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 69.3 bits (162), Expect = 3e-12
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 QRTPQGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLE-AARQL 442
+R Q + F E L+ G +LCK+AN I N I KI S+ +F ENI+ FL+ R L
Sbjct: 295 ERPNQRPGETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVL 354
Query: 443 GVPAQETFQTVDLWERQNLNSV 508
G+ FQTVDL+ERQN+ V
Sbjct: 355 GLDRLNLFQTVDLFERQNVGMV 376
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 148 NNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 264
+N+ G AE RKI SKY EL + +W+ + GE
Sbjct: 9 SNKHKSFGLTAEVNRKIQSKYDTELEMQCRDWLEKMLGE 47
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 64.1 bits (149), Expect = 9e-11
Identities = 35/78 (44%), Positives = 47/78 (60%)
Frame = +2
Query: 401 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEA 580
MENI FL LGV + FQTVDL+E+QN+ + +A P +GPKEA
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAA---------RAKGLNCPQLGPKEA 68
Query: 581 EKNVRNFSEEQLRAGQGV 634
E N R+F E++LRAG+G+
Sbjct: 69 EANPRSFDEDKLRAGKGI 86
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 40.3 bits (90), Expect(2) = 3e-07
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 374 NTSSMAFKCMENINAFLEAARQ--LGVPAQETFQTVDLWERQNLNSVVICLQSLGRK 538
N S + ENI FL A ++ Q+ FQTV L+ERQNL V+ +Q+ RK
Sbjct: 889 NRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARK 945
Score = 31.9 bits (69), Expect(2) = 3e-07
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 557 PSIGPKEAEKNVRNFSEE 610
P GPKEAEKN RNF E+
Sbjct: 986 PLFGPKEAEKNPRNFPEQ 1003
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 338 ANNIHPNMIKK--INTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNL 499
AN I P +IKK +N M FK MENI F+ + GV + F TVDL+E++N+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 48.8 bits (111), Expect = 4e-06
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = +2
Query: 212 ARSWPTSPWNGFG*SPANQRT--PQGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSS 385
AR W S G PA+ R P + +F + L+DG LLC++AN +HP + +
Sbjct: 25 ARDWMIS----IGVLPAHGRVTDPNFTLFDFAQSLRDGVLLCQVANVLHPGAVVDVGMKP 80
Query: 386 M--AFKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSL 529
F C++NI FL A +L + + F +L++ + VV L L
Sbjct: 81 QMSQFMCLKNIRNFLTACTRLFNLADGDLFDANELYDVSDFGKVVNTLSKL 131
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +2
Query: 557 PSIGPKEAEKNVRNFSEEQLRAGQGVI 637
P++GPKEAE NVR F+EEQLRAG+ ++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAF------KCMENINAFLEAARQLGVP 451
D+ L DG +LC L N+ + I I+ S KCM+N++ FLEA ++LGV
Sbjct: 330 DDLPASLADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVD 389
Query: 452 AQETFQTVDLWERQNLNSVVICLQSL 529
+ + D+ + ++ V +Q+L
Sbjct: 390 RELLCSSADILQEKSPQRVCATVQAL 415
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 469
D+F E L DG LLC+L N+ + +IN A +N++ F A LG+ + F+
Sbjct: 48 DDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSVFFRACEALGLDKYQLFE 107
Query: 470 TVDLWE 487
DL E
Sbjct: 108 HEDLDE 113
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 151 NRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGEPENTSGRY 288
NR G AE RK+++KY + E+++WI + GE T ++
Sbjct: 661 NRQKGYGMTAELSRKMSAKYDPVMDAEAVDWIEKVLGEEMVTIAKF 706
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 401 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSV 508
M I FL+ GV + FQTVDL+E+QN+ V
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 34.7 bits (76), Expect = 0.066
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNI----------HPNMI--KKI--------NTSSMAFKCMEN 409
D F+ L+DGTLLCKLAN I H + KKI + S F EN
Sbjct: 691 DFFFYALEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSREN 750
Query: 410 INAFLEAARQLGVPAQETFQTVDLWE----RQNLNSVVICLQSLGRKAGTY 550
+ FL R +P F++ D+ R +VICL + R+ Y
Sbjct: 751 VQKFLTWCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRVIKY 801
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 34.7 bits (76), Expect = 0.066
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Frame = +2
Query: 290 DNFYEVLKDGTLLCKLANNIH-----------------PNMIKKI--NTSSMAFKCMENI 412
DNF + L +G LLCKLA I P++ + N S F +N
Sbjct: 56 DNFMDYLDNGVLLCKLAQLIQKAATEWIKLDKAMSVTLPSLGSRFHQNAKSGTFFARDNA 115
Query: 413 NAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNV 592
FL+ + +G+ F++ L ++ V++CL + R A +G + EK +
Sbjct: 116 AYFLKWCKGVGIQDSVMFESDGLVLQKQPREVLLCLLDVARFAANFGIDPPNLVKLEKEI 175
Query: 593 RNFSEEQLR 619
E++++
Sbjct: 176 DEEIEQEVK 184
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 389 AFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYG 553
+F +N++ F+ R+L VP F+T DL +N +V++ L + RKA G
Sbjct: 103 SFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFKVG 157
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 284 DMDNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM-AFKCMENINAFLEAARQLG 445
D + YE +KDG LLCK+ N P I + IN + F EN + +A +G
Sbjct: 75 DSSDLYEKVKDGILLCKMINLSAPGTIDERVINKPPLKVFTIHENQTLVINSALAIG 131
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 473 VDLWERQNLNSVVICLQSLG 532
V +W +N +SVV+C+QSLG
Sbjct: 258 VSVWASENTSSVVVCVQSLG 277
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 275 PQGDMDNFYEVLKDGTLLCKLANNIHPNMI 364
P D++NF +DG +C+L N + P +I
Sbjct: 442 PHRDINNFDTDWRDGMAICELVNALQPGLI 471
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 146 QTTERPNQDLQLKPRERSTANTARSW--PTSP 235
+T RP Q LQ+KP S A T R+ PT P
Sbjct: 213 ETARRPGQGLQVKPAAESNAQTDRNARPPTKP 244
>SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20)
Length = 303
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 136 FEMANNRATKSGFAAEAQRKINSKYSEELAHESLEWI 246
FE N A AE QRKIN K E++ + WI
Sbjct: 180 FERWQNHADSLKKEAETQRKINQKIQEKVNNNIGTWI 216
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 201 QQIQRGAGPRVLGMDSDDHRRTREHLR 281
Q+ QR GP+V+G +S D R RE+ +
Sbjct: 2291 QRPQRPMGPQVVGKESRDEARKREYYK 2317
>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
Length = 1128
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 149 TTERPNQDLQLKPRERSTANTARSWPTSPWNGFG*SPANQRTPQGDM--DNFYEV 307
T RP + Q R R A +R W TS +GF +PA+ D+ D YEV
Sbjct: 884 TWSRPYSNAQCTMRARPLAGASRDWVTS--SGFS-NPASLSCVLDDLEPDTLYEV 935
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,459,446
Number of Sequences: 59808
Number of extensions: 487186
Number of successful extensions: 1418
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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