Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C06
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    24   3.6  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   4.8  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   8.4  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    23   8.4  

>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 567 DRKKLRRTCETSPRSSSGLVR 629
           + +KLRRT E + +SS+ LVR
Sbjct: 337 ETEKLRRTVEQTGKSSAELVR 357


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 523 LQADHDGVEILS---LPQVDSLKSFLCRYTQLSCGFEESVDILHALE 392
           LQ DH+ +  L+      +DSLK    +Y +++     + D LH L+
Sbjct: 845 LQLDHNLLTALNGFEFEGLDSLKELFLQYNRIASIANHTFDHLHGLK 891


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 204 QIQRGAGPRVLGMDSDDHRRTREHLRAI 287
           ++Q     R LG+   DH + R+H+  +
Sbjct: 783 EVQSSRSIRYLGVQLQDHLKWRDHVTKV 810


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 EPENTSGRYGQLLRSA*RRHSSVQASQQH 348
           E E       + L+SA + HS  QA Q+H
Sbjct: 210 EREEQDKMKNESLKSAQQHHSQKQAQQEH 238


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,034
Number of Sequences: 2352
Number of extensions: 16110
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)