SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C06
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47500.1 68415.m05929 kinesin motor protein-related                 42   5e-04
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse...    39   0.003
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    38   0.006
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    37   0.010
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    36   0.018
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    35   0.054
At1g09170.1 68414.m01024 kinesin motor protein-related similar t...    34   0.071
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    34   0.094
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    33   0.16 
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    31   0.50 
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    31   0.66 
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    31   0.66 
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    31   0.88 
At5g41310.1 68418.m05020 kinesin motor protein-related                 30   1.2  
At5g11090.1 68418.m01295 serine-rich protein-related contains so...    29   2.0  
At3g02140.1 68416.m00182 expressed protein                             29   2.0  
At1g15940.1 68414.m01913 expressed protein similar To androgen-i...    29   2.0  
At3g32270.1 68416.m04114 hypothetical protein similar to putativ...    29   3.5  
At4g15830.1 68417.m02408 expressed protein                             28   6.2  
At1g21750.2 68414.m02723 protein disulfide isomerase, putative s...    28   6.2  
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s...    28   6.2  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    28   6.2  
At1g11060.1 68414.m01267 expressed protein                             28   6.2  
At5g03300.1 68418.m00281 adenosine kinase 2 (ADK2) contains Pfam...    27   8.2  
At4g04920.1 68417.m00715 expressed protein                             27   8.2  
At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra...    27   8.2  

>At2g47500.1 68415.m05929 kinesin motor protein-related 
          Length = 974

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
 Frame = +2

Query: 308 LKDGTLLCKLANNIHPNMIKKINTSSM------------AFKCMENINAFLEAARQLGVP 451
           L+ G +LCK+ N + P  + K+  S              AF+  EN+  FL A +++G P
Sbjct: 79  LRSGIILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP 138

Query: 452 AQETFQTVDLWERQNLNSVVICLQSL 529
              TF+  DL +  N + VV C+ ++
Sbjct: 139 ---TFEASDLEQGGNASRVVNCVLAI 161


>At5g27000.1 68418.m03221 kinesin motor protein-related
           non-consensus AT donor splice site at exon 12;
           non-consensus AC acceptor splice site at exon 13
          Length = 987

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
 Frame = +2

Query: 308 LKDGTLLCKLANNIHPNMIKKI---------NTSSMAFKCMENINAFLEAARQLGVPAQE 460
           L+ G +LC + N ++P  + K+           +  AF+  ENI  FL A  ++G+P   
Sbjct: 79  LRSGIVLCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEMGLP--- 135

Query: 461 TFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVR-NFSEEQL 616
           +F+  D+ +      +V C+ +L   +    K   GP     N++ NF   +L
Sbjct: 136 SFEASDMEKGGKSIRIVNCILALKSYSEWKLKGENGPWRYGSNMKHNFGSRKL 188


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
 Frame = +2

Query: 296 FYEVLKDGTLLCKLANNIHPNMIKKI--NTSSM--------AFKCMENINAFLEAARQLG 445
           F   L++G +LC   N IHP  + K+  N S +        A++  EN+  FL A   L 
Sbjct: 47  FISCLRNGMILCNAINKIHPGAVSKVVENYSYLNGEYQLPPAYQYFENVRNFLVALETLR 106

Query: 446 VPAQETFQTVDLWERQNLNS-----VVICLQSLGRKA 541
           +P    F+  DL E+ NL S     VV C+  LG KA
Sbjct: 107 LPG---FEASDL-EKDNLESGSVTKVVDCI--LGLKA 137


>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +2

Query: 290 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 445
           ++ +EV KDG LLCKL N   P  I  + INT SM   ++  EN    L +A+ +G
Sbjct: 155 NDLFEVAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIG 210


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +2

Query: 284 DMDNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 445
           D ++ YE++KDG LLCKL N   P  I  + INT  +   ++  EN    L +A+ +G
Sbjct: 153 DSNDLYELVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVG 210


>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +2

Query: 296 FYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 445
           F++++KDG LLCKL N   P  I  + INT      ++  EN+   L +A+ +G
Sbjct: 155 FFDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIG 208


>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
           GB:AAB61066
          Length = 1010

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
 Frame = +2

Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKI------------NTSSMAFKCMENINAFLEAA 433
           ++F   L+ G LLC + N + P  + K+              +  AF+  EN+  FL   
Sbjct: 83  EDFRIALRSGILLCNVLNRVKPGAVPKVVEAPNDPLVNQDGAALSAFQYFENLRNFLVFV 142

Query: 434 RQLGVPAQETFQTVDLWERQNLNSVVICLQSL 529
            ++G+P   TF+  D  +      +V C+ +L
Sbjct: 143 EEMGIP---TFEVSDFEKGGKSARIVECVLAL 171


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +2

Query: 290 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 445
           +  YE++KDG LLCKL N   P  I  + INT  +   ++  EN    L +A+ +G
Sbjct: 154 NQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVG 209


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = +2

Query: 299 YEVLKDGTLLCKLANNIHPNMI--KKINTSS--MAFKCMENINAFLEAARQLG 445
           ++++KDG LLCKL N   P  I  + INT      ++  EN++  L +A+ +G
Sbjct: 150 FDLVKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIG 202


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
 Frame = +2

Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKI-------------NTSSMAFKCMENINAFLEA 430
           D F   L++G +LC + N ++P  + K+               +  A +  EN+  FL+A
Sbjct: 16  DEFSLALRNGLILCNVLNKVNPGSVLKVVENPITPAIQYADGAAQSAIQYFENMRNFLKA 75

Query: 431 ARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 529
              + +    TF   DL +  + N VV C+  L
Sbjct: 76  VEDMQL---LTFGASDLEKGGSSNKVVDCILCL 105


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +2

Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 469
           D     L+DGT+LC L N + P  ++   +   A      I  FL A  ++ +P    F+
Sbjct: 65  DELRACLRDGTVLCSLLNQLSPGSMRMGGSFEPA---SVKIERFLTAMDEMALP---RFE 118

Query: 470 TVDLWERQNLNSVVICLQSL--GRKAGTYGKPSIGPK 574
             D+ E+ ++  V+  L++L      G+Y K S+  +
Sbjct: 119 VSDI-EQGDMVPVLQSLKALKASFSDGSYDKNSLAAR 154


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +2

Query: 290 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 469
           D     L+DGT+LC L N + P  ++   +   A      I  FL A  ++ +P    F+
Sbjct: 65  DELRACLRDGTVLCSLLNQLSPGSMRMGGSFEPA---SVKIERFLTAMDEMALP---RFE 118

Query: 470 TVDLWERQNLNSVVICLQSL--GRKAGTYGKPSIGPK 574
             D+ E+ ++  V+  L++L      G+Y K S+  +
Sbjct: 119 VSDI-EQGDMVPVLQSLKALKASFSDGSYDKNSLAAR 154


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
            to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
            sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
            contains Pfam PF00569: Zinc finger, ZZ type domain;
            identical to histone acetyltransferase HAC4 (GI:14794966)
            {Arabidopsis thaliana}
          Length = 1456

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 395  KCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPK 574
            K +E    FLE  R+   P++  +++  ++  Q + +V +CL   G     +G  S GP 
Sbjct: 913  KVLEVKERFLELFREENYPSEFPYKSKAIFLFQKIENVEVCL--FGMFVQEFGTDS-GPP 969

Query: 575  EAEKNVRNFSEEQLR 619
               +  R  S E LR
Sbjct: 970  NERRTFRTVSGEALR 984


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 308 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTV 475
           L DGT+LC L N + P  ++     S    C+ NI  FL A  ++ +P  E+ + +
Sbjct: 72  LVDGTVLCNLLNQLSPGSMRM--GGSFEPGCV-NIERFLAAMDEMTLPRFESLKAL 124


>At5g11090.1 68418.m01295 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 217

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 244 IRMITGEPENTSGRYGQLLRSA*RRHSSVQASQQHPPEHDQK 369
           + + T +P + S RY    RS    + S+  S+  PP H+ K
Sbjct: 77  VNLYTAQPMSQSFRYSLDSRSISPTNKSISVSKNQPPSHNHK 118


>At3g02140.1 68416.m00182 expressed protein
          Length = 319

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 355 EHDQKDQHIVDGLQVHGEYQRFPRSRK 435
           E D+KD  +  GL ++G++   PRSRK
Sbjct: 57  EEDEKDVELTLGLSLNGQFGTDPRSRK 83


>At1g15940.1 68414.m01913 expressed protein similar To
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]
          Length = 990

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +1

Query: 193 KINSKYSEELAHESLEWIRMITGEPENTSGRYGQLLRSA*RRHSSVQASQQHPPEHDQKD 372
           K  S   E    ++L+ ++ + GEP+ T GR G+  +     H  ++       + + KD
Sbjct: 698 KAVSNEPESTTGKNLKSLKKLNGEPDKTRGRTGKKQKVTQAMHRKIEKDCDEQEDLETKD 757

Query: 373 QHIVDGLQVHGEYQRFP 423
           +   D L++  E    P
Sbjct: 758 EE--DSLKLGKESDAEP 772


>At3g32270.1 68416.m04114 hypothetical protein similar to putative
           replication protein A1 GB:AAC95163 GI:4006821 from
           [Arabidopsis thaliana]
          Length = 209

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -3

Query: 519 KQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIFSMHLKAIDDVLIFLIMFGWML 343
           + +  +LR C   ++   K++C     CLA+ ++AL FS +  ++   +I  ++  W L
Sbjct: 144 QNVVNDLRICFKLKN---KINCV--LECLASGKQALDFSQNYHSLGGGVIVAVLGWWKL 197


>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 534 LPSDCKQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIFSMHLKAIDDVLIFLIM 358
           LP   K I   ++   + RS + K S     +   A  + L+   HLK++DD+L+ L+M
Sbjct: 97  LPILEKLIVVMVKAMKNPRSALCKTSIMTCSDIFTAYGEKLLEGPHLKSMDDLLLQLLM 155


>At1g21750.2 68414.m02723 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 487

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 136 FEMANNRATKS-GFAAEAQRKINSKYSEELAHESLEWIRMITGEPENTSGRY 288
           FE  N +A     F  E    + SKY E       + +  + G+ EN+ G +
Sbjct: 263 FESTNTKAMLFINFTGEGAESLKSKYREVATSNKGQGLSFLLGDAENSQGAF 314


>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 501

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 136 FEMANNRATKS-GFAAEAQRKINSKYSEELAHESLEWIRMITGEPENTSGRY 288
           FE  N +A     F  E    + SKY E       + +  + G+ EN+ G +
Sbjct: 263 FESTNTKAMLFINFTGEGAESLKSKYREVATSNKGQGLSFLLGDAENSQGAF 314


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
 Frame = +1

Query: 271 NTSGRYGQLLRSA*RRHSSVQASQQHPPEHDQKDQHIVDGLQVHGEYQRFPRSR-KTVGC 447
           NT     Q +++      S Q  QQ   +H  + Q +    Q+    Q+  +      G 
Sbjct: 476 NTVNHISQQMQAQPAMVKSQQQQQQQQQQHQHQQQQLQQQQQLQMSQQQVQQQGIYNNGT 535

Query: 448 TGTGNFSNCR----PVGETESQLRRDLLAVTGQK 537
               N  +C+    P G ++SQL++  +  TG K
Sbjct: 536 IAVANQVSCQSPNQPTGFSQSQLQQQSMLPTGAK 569


>At1g11060.1 68414.m01267 expressed protein 
          Length = 930

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
 Frame = +1

Query: 139 EMANNRATKSGFAAEAQRKINSKYSEELAHES-LEWIRMITGEPENTSGRYGQLLRSA*R 315
           +M +    + GF++     +NS YS    H+S LE  R +T E    S      + S   
Sbjct: 464 KMLSGLHLRGGFSSPNTNNVNSHYSNGGNHDSVLEANRKVTNEVVTISSDTYSTVGSIST 523

Query: 316 RHSSVQASQQHPPEHDQKDQHIVDGLQVHGEYQRFPRSRKTVGCTGTGNFS 468
           R+ SV    Q     D      + G Q          S+  VG T +G+F+
Sbjct: 524 RNGSVSQRSQSIIHLDFSPTS-MSGSQSSVSGNEPTTSKTRVGSTISGSFA 573


>At5g03300.1 68418.m00281 adenosine kinase 2 (ADK2) contains Pfam
           profile: PF00294 pfkB family carbohydrate kinase;
           identical to cDNA adenosine kinase 2 (ADK2) GI:12017763
          Length = 345

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 461 TFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSI 565
           TF  V  WE +++  + I +  L +  GTY + ++
Sbjct: 229 TFSRVHGWETEDVEQIAIKISQLPKATGTYKRTTV 263


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 143 WQTTERPNQDLQLKPRERSTANTARSWPTSPWNGF 247
           W+ T  P   LQ  P+  + +    S  +S W GF
Sbjct: 347 WEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGF 381


>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
           transferase 2 (IPT2) identical to tRNA
           isopentenyltransferase (IPT2) [Arabidopsis thaliana]
           GI:14279058; identical to cDNA tRNA isopentenyl
           transferase GI:12383201;
          Length = 466

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 284 DMDNFYEVLKDGTLLCKLANNIHPNMIKKIN 376
           D+ + YE+LK+  L    AN IHPN  +KIN
Sbjct: 163 DLSHGYELLKE--LDPVAANRIHPNNHRKIN 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,993
Number of Sequences: 28952
Number of extensions: 339800
Number of successful extensions: 991
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -