Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C05
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1036 + 9021395-9021658,9024214-9024690 36 0.021
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 33 0.25
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 3.1
07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342... 29 4.1
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787... 28 5.5
06_03_0765 + 24421982-24422120,24422287-24422367,24422722-244229... 28 7.2
11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778... 27 9.6
08_02_1304 - 26008105-26009070 27 9.6
08_01_0027 - 195321-195932,197206-197415 27 9.6
02_05_1146 - 34440647-34441674,34442138-34443896 27 9.6
01_07_0176 - 41733845-41734834,41736058-41736588 27 9.6
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 338 PIFNEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 511
P+F M + M ++ I+ + DVS+ LR + +MY E + ++ + + AE+ +V
Sbjct: 93 PVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMASDLLVLAEKYEV 152
Query: 512 KGL 520
K L
Sbjct: 153 KNL 155
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 344 FNEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 475
F++MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 377 FDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422
>03_06_0766 -
36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 44 SKLCKRALLGNT*VIFF---SNCFSLPGIITYKRLG*VPRSXSVAIMASDEQF 193
S+ CK+ LG + SNC L G+ K R+ S+ ++SDEQF
Sbjct: 265 SEDCKKYKLGEAKTFHYLNQSNCIELDGLDDSKEYTDTRRAMSIVGISSDEQF 317
>07_03_1549 -
27633229-27633340,27633418-27633509,27633601-27634270,
27634731-27634870,27634958-27635299
Length = 451
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 299 NLPSAANVTX--SEISTRQQAMKAR*HICVESC 207
+LPS+AN T SE+S +K R +C+E C
Sbjct: 240 SLPSSANETGNTSEVSLDHSELKLRYELCLEDC 272
>08_01_0811 -
7872886-7873261,7873446-7873861,7874253-7874262,
7874370-7875334
Length = 588
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQRNVQNE 366
VT + +G L AH++ L++ SP F+ V E
Sbjct: 177 VTFSVDGELFAAHRVILAMRSPVFRAAVYGE 207
>06_03_0765 +
24421982-24422120,24422287-24422367,24422722-24422962,
24423078-24423171,24423513-24423729,24423818-24423909,
24424303-24424638
Length = 399
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 237 SPLTYLRGKLFQHSENCSSDAMIATX--LXRGTYPKRLYVIIPGREKQFEKNITQVFPSR 64
+P ++ G L + E D A+ L G Y R+++ +PG T+V P R
Sbjct: 107 TPSDFVSGMLKKFGEKRRDDDEAASLRWLDVGLYTSRIFMAVPGCSTMVGPMNTEVLPRR 166
Query: 63 ARL 55
R+
Sbjct: 167 VRV 169
>11_04_0388 +
17076157-17076254,17076762-17076813,17077672-17077867,
17078242-17078321,17078465-17078581,17078895-17078950,
17079238-17079268,17079292-17079342,17080411-17080477,
17080621-17080724,17080802-17080909,17081874-17081987
Length = 357
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 101 CFSLPGIITYKRLG*VPRSXSVAIMASDEQFSLCWNNFPRK 223
C PG ++G P+ +A + E S+ W N PRK
Sbjct: 200 CSLGPGYFFEGKVGGEPKPKELAYPSLQEAISVPWKNLPRK 240
>08_02_1304 - 26008105-26009070
Length = 321
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 380 PIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 508
P V L+D+ + R LL F+Y +V Q E +S ST + LQ
Sbjct: 193 PCVTLRDIEPATFRALLHFVY---TDVLQIEGSSSTSTTDLLQ 232
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 262 ISLXVTLAAEGRLLQAHKLXLSVCSPYFQR---NVQNESNTTSDSIFKRC*SFCTKRLIT 432
I VT+ +L+AHK L+ CSP F+ + E +++ +I C C+ +
Sbjct: 106 IHADVTINTTDGVLKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGF 165
Query: 433 VY 438
+Y
Sbjct: 166 IY 167
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 305 KHINXFYQYVLPIFNEMFKMNPTQHPIVFLKDVSHSALRDLLQFMY 442
KH FY Y+ F E K NP Q P S + L+ MY
Sbjct: 767 KHWREFYAYMAARFTEDAKQNPVQIPRSRTNGWQASWKKFLIDMMY 812
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQR 351
VT + EGRL+ AH+ L+ S +F++
Sbjct: 25 VTFSVEGRLVHAHRCILAARSLFFRK 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,486
Number of Sequences: 37544
Number of extensions: 260818
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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