Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C05
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68216-4|CAA92463.2| 565|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched rela... 31 0.93
AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical... 31 0.93
Z92808-3|CAB07268.1| 946|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81476-14|CAB03924.1| 946|Caenorhabditis elegans Hypothetical p... 30 1.2
U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine rece... 29 3.7
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 28 4.9
L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 28 6.5
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 28 6.5
>Z68216-4|CAA92463.2| 565|Caenorhabditis elegans Hypothetical
protein F27C8.5 protein.
Length = 565
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 341 IFNEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 511
+F+E F + + D ++R + +MY GE+++ + +A ++ A L+V
Sbjct: 59 VFSETFDNQRAPYQPFNMTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASYLRV 115
>AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched related
family protein 15 protein.
Length = 840
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 YCKHINXFYQYVLPIFNE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 472
Y H+ FYQY L I++ F + P I+F + + D L+F+Y E ++ +EE
Sbjct: 15 YLAHL--FYQYGLFIYDRPRFFTLGPLILTIIFSFGILNMRTEDDLRFLYSPEHSLSREE 72
>AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical
protein R12E2.1 protein.
Length = 531
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYF 345
++ VTL + + AH++ LS CSPYF
Sbjct: 53 DVLCDVTLICGWKRINAHRVVLSACSPYF 81
>Z92808-3|CAB07268.1| 946|Caenorhabditis elegans Hypothetical
protein M04C3.1a protein.
Length = 946
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTT 378
+I L + E +LL H + S+C F N+QNE T
Sbjct: 740 QIDLIRDVLVEKKLLSEHMIISSICKTIFLPNLQNEHKPT 779
>Z81476-14|CAB03924.1| 946|Caenorhabditis elegans Hypothetical
protein M04C3.1a protein.
Length = 946
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTT 378
+I L + E +LL H + S+C F N+QNE T
Sbjct: 740 QIDLIRDVLVEKKLLSEHMIISSICKTIFLPNLQNEHKPT 779
>U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine
receptor, class v protein31 protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 608 IVFVVTTWGLASKSALVWMAWNFLHF 531
++F TTWGL +K + M + + HF
Sbjct: 59 MIFYTTTWGLRTKPGIREMLYTYQHF 84
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 446 GEVNVKQEELASFISTAEQLQVKGLTGNQ 532
G K EE+ +I ++++ +GLTGNQ
Sbjct: 650 GPTKQKLEEVLDYIGCSQKINYQGLTGNQ 678
>L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical
protein C50C3.8 protein.
Length = 410
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 338 PIFNEMFK---MNPTQHPIVFLKDVSHSALRDLLQFMYQG--EVNVKQEELASFISTAEQ 502
P+F MF M Q + ++D + ++R +++FMY G E Q + ++ A++
Sbjct: 242 PVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTGATESLESQGNIDEILAIADK 301
Query: 503 LQV 511
+V
Sbjct: 302 YEV 304
>Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical
protein T27E9.4b protein.
Length = 591
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348
V L E R L AHK+ L+ PYF+
Sbjct: 53 VALLVENRKLSAHKVILAATIPYFR 77
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348
V L E R L AHK+ L+ PYF+
Sbjct: 53 VALLVENRKLSAHKVILAATIPYFR 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,700
Number of Sequences: 27780
Number of extensions: 239458
Number of successful extensions: 476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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