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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C05
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    31   0.93 
AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    31   0.93 
Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical p...    30   1.2  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    29   3.7  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    28   4.9  
L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical p...    28   6.5  

>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +2

Query: 341 IFNEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 511
           +F+E F      +    + D    ++R +  +MY GE+++ +  +A  ++ A  L+V
Sbjct: 59  VFSETFDNQRAPYQPFNMTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASYLRV 115


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 299 YCKHINXFYQYVLPIFNE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 472
           Y  H+  FYQY L I++    F + P    I+F   + +    D L+F+Y  E ++ +EE
Sbjct: 15  YLAHL--FYQYGLFIYDRPRFFTLGPLILTIIFSFGILNMRTEDDLRFLYSPEHSLSREE 72


>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYF 345
           ++   VTL    + + AH++ LS CSPYF
Sbjct: 53  DVLCDVTLICGWKRINAHRVVLSACSPYF 81


>Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTT 378
           +I L   +  E +LL  H +  S+C   F  N+QNE   T
Sbjct: 740 QIDLIRDVLVEKKLLSEHMIISSICKTIFLPNLQNEHKPT 779


>Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTT 378
           +I L   +  E +LL  H +  S+C   F  N+QNE   T
Sbjct: 740 QIDLIRDVLVEKKLLSEHMIISSICKTIFLPNLQNEHKPT 779


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 608 IVFVVTTWGLASKSALVWMAWNFLHF 531
           ++F  TTWGL +K  +  M + + HF
Sbjct: 59  MIFYTTTWGLRTKPGIREMLYTYQHF 84


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 446 GEVNVKQEELASFISTAEQLQVKGLTGNQ 532
           G    K EE+  +I  ++++  +GLTGNQ
Sbjct: 650 GPTKQKLEEVLDYIGCSQKINYQGLTGNQ 678


>L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical
           protein C50C3.8 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 338 PIFNEMFK---MNPTQHPIVFLKDVSHSALRDLLQFMYQG--EVNVKQEELASFISTAEQ 502
           P+F  MF    M   Q   + ++D  + ++R +++FMY G  E    Q  +   ++ A++
Sbjct: 242 PVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTGATESLESQGNIDEILAIADK 301

Query: 503 LQV 511
            +V
Sbjct: 302 YEV 304


>Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical
           protein T27E9.4b protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348
           V L  E R L AHK+ L+   PYF+
Sbjct: 53  VALLVENRKLSAHKVILAATIPYFR 77


>Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical
           protein T27E9.4a protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348
           V L  E R L AHK+ L+   PYF+
Sbjct: 53  VALLVENRKLSAHKVILAATIPYFR 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,700
Number of Sequences: 27780
Number of extensions: 239458
Number of successful extensions: 476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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