BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C05 (643 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68216-4|CAA92463.2| 565|Caenorhabditis elegans Hypothetical pr... 31 0.53 AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched rela... 31 0.93 AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical... 31 0.93 Z92808-3|CAB07268.1| 946|Caenorhabditis elegans Hypothetical pr... 30 1.2 Z81476-14|CAB03924.1| 946|Caenorhabditis elegans Hypothetical p... 30 1.2 U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine rece... 29 3.7 U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 28 4.9 L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 28 4.9 Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 28 6.5 Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 28 6.5 >Z68216-4|CAA92463.2| 565|Caenorhabditis elegans Hypothetical protein F27C8.5 protein. Length = 565 Score = 31.5 bits (68), Expect = 0.53 Identities = 13/57 (22%), Positives = 29/57 (50%) Frame = +2 Query: 341 IFNEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 511 +F+E F + + D ++R + +MY GE+++ + +A ++ A L+V Sbjct: 59 VFSETFDNQRAPYQPFNMTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASYLRV 115 >AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched related family protein 15 protein. Length = 840 Score = 30.7 bits (66), Expect = 0.93 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +2 Query: 299 YCKHINXFYQYVLPIFNE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 472 Y H+ FYQY L I++ F + P I+F + + D L+F+Y E ++ +EE Sbjct: 15 YLAHL--FYQYGLFIYDRPRFFTLGPLILTIIFSFGILNMRTEDDLRFLYSPEHSLSREE 72 >AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical protein R12E2.1 protein. Length = 531 Score = 30.7 bits (66), Expect = 0.93 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYF 345 ++ VTL + + AH++ LS CSPYF Sbjct: 53 DVLCDVTLICGWKRINAHRVVLSACSPYF 81 >Z92808-3|CAB07268.1| 946|Caenorhabditis elegans Hypothetical protein M04C3.1a protein. Length = 946 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTT 378 +I L + E +LL H + S+C F N+QNE T Sbjct: 740 QIDLIRDVLVEKKLLSEHMIISSICKTIFLPNLQNEHKPT 779 >Z81476-14|CAB03924.1| 946|Caenorhabditis elegans Hypothetical protein M04C3.1a protein. Length = 946 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 259 EISLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTT 378 +I L + E +LL H + S+C F N+QNE T Sbjct: 740 QIDLIRDVLVEKKLLSEHMIISSICKTIFLPNLQNEHKPT 779 >U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine receptor, class v protein31 protein. Length = 324 Score = 28.7 bits (61), Expect = 3.7 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -3 Query: 608 IVFVVTTWGLASKSALVWMAWNFLHF 531 ++F TTWGL +K + M + + HF Sbjct: 59 MIFYTTTWGLRTKPGIREMLYTYQHF 84 >U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical protein T07F8.1 protein. Length = 822 Score = 28.3 bits (60), Expect = 4.9 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 446 GEVNVKQEELASFISTAEQLQVKGLTGNQ 532 G K EE+ +I ++++ +GLTGNQ Sbjct: 650 GPTKQKLEEVLDYIGCSQKINYQGLTGNQ 678 >L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical protein C50C3.8 protein. Length = 410 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = +2 Query: 338 PIFNEMFK---MNPTQHPIVFLKDVSHSALRDLLQFMYQG--EVNVKQEELASFISTAEQ 502 P+F MF M Q + ++D + ++R +++FMY G E Q + ++ A++ Sbjct: 242 PVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTGATESLESQGNIDEILAIADK 301 Query: 503 LQV 511 +V Sbjct: 302 YEV 304 >Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical protein T27E9.4b protein. Length = 591 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348 V L E R L AHK+ L+ PYF+ Sbjct: 53 VALLVENRKLSAHKVILAATIPYFR 77 >Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical protein T27E9.4a protein. Length = 589 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348 V L E R L AHK+ L+ PYF+ Sbjct: 53 VALLVENRKLSAHKVILAATIPYFR 77 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,966,700 Number of Sequences: 27780 Number of extensions: 239458 Number of successful extensions: 476 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 457 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 476 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1427403330 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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