Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C05
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      73   2e-15
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          58   5e-11
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.47 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.8  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 32/62 (51%), Positives = 44/62 (70%)
 Frame = +2

Query: 338 PIFNEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKG 517
           P F E+ K  P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V G
Sbjct: 55  PYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSG 114

Query: 518 LT 523
           LT
Sbjct: 115 LT 116



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQ 348
           VTLA +GR L+AH++ LS CSPYF+
Sbjct: 34  VTLACDGRSLKAHRVVLSACSPYFR 58


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 58.4 bits (135), Expect = 5e-11
 Identities = 24/60 (40%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = +2

Query: 344 FNEMFKMNPTQHPIVFL-KDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 520
           F ++   NP +HP + + +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 61  FQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120



 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 238 FMACCRVEISLXVTLAAEGRLLQAHKLXLSVCSPYFQR 351
           F    + E  + VTLA     L+AHK+ LS CS YFQ+
Sbjct: 26  FHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQK 63


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 425 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 541
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 543 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 445
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -2

Query: 606 CLCCDDL-GPG 577
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 265 SLXVTLAAEGRLLQAHKLXLSVCSPYFQRNVQNESNTTSDSIFKR 399
           SL V L  E +  +  +L LSV   +    ++ +   + D+ FK+
Sbjct: 219 SLEVQLVIEEQSTEQERLLLSVLPEHVAVKMRQDLGASLDTQFKK 263


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +1

Query: 70  WEHLSYIFFKLFLPTXNYN 126
           W+H   ++F+L  P    N
Sbjct: 73  WDHKGIVYFELLPPNRTIN 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,820
Number of Sequences: 438
Number of extensions: 2845
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)