Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C05
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 34 0.092
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 34 0.092
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 33 0.16
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 32 0.37
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 32 0.37
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 31 0.49
At5g20630.1 68418.m02450 germin-like protein (GER3) identical to... 28 4.6
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 27 8.0
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 27 8.0
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 27 8.0
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 33.9 bits (74), Expect = 0.092
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 356 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 535
F + + ++ L+ VS+ L LLQ++Y G + + ELA + + +V L Q
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295
Query: 536 EE 541
EE
Sbjct: 296 EE 297
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 344 FNEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 463
F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 378 FAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 33.9 bits (74), Expect = 0.092
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 356 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 535
F + + ++ L+ VS+ L LLQ++Y G + + ELA + + +V L Q
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295
Query: 536 EE 541
EE
Sbjct: 296 EE 297
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 344 FNEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 463
F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 378 FAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 338 PIFNEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 511
P+F M + M + + + DVS+ ALR + ++Y E + ++ + +E+ QV
Sbjct: 92 PVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQV 151
Query: 512 KGL 520
K L
Sbjct: 152 KHL 154
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 386 VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 520
+ L D+SH L+ LL+F+Y G + + S A++ + L
Sbjct: 68 ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 386 VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 520
+ L D+SH L+ LL+F+Y G + + S A++ + L
Sbjct: 68 ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 31.5 bits (68), Expect = 0.49
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQRNVQNE 366
V +GR ++AH++ LS SP+F++ +NE
Sbjct: 175 VMFYVQGRPIEAHRVILSARSPFFKQKFENE 205
>At5g20630.1 68418.m02450 germin-like protein (GER3) identical to
germin-like protein subfamily 3 member 3 [SP|P94072]
Length = 211
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 299 YCKHINXFYQYVLPIFNEMFKMNPTQHP-IVFLKDVSHSALRDLLQF-MYQGEVNVKQEE 472
Y K +N V P F++N + P + F+ S S +L F ++ ++ + E
Sbjct: 131 YLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVE 190
Query: 473 LASFISTAEQLQVKGLTGNQN 535
+F+S AE ++KG+ G N
Sbjct: 191 ATTFLSDAEVKKLKGVLGGTN 211
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 207 FQHSENCSSDAMIATXLXRGTYPKRLYVIIPGREKQFEKNITQVFPSRARLHSLLK-YVL 31
F HS +++ A + ++L+ +P R K+F++NI + + +L SLL Y L
Sbjct: 139 FDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEY---GKLVSLLNAYAL 195
Query: 30 PRVEVMFV 7
V FV
Sbjct: 196 IAKGVRFV 203
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQR 351
VT + EGRL+ AH+ L+ S +F++
Sbjct: 29 VTFSVEGRLVHAHRCILAARSLFFRK 54
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 274 VTLAAEGRLLQAHKLXLSVCSPYFQR 351
VT + EGRL+ AH+ L+ S +F++
Sbjct: 28 VTFSVEGRLVHAHRCILAARSLFFRK 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,231
Number of Sequences: 28952
Number of extensions: 219079
Number of successful extensions: 486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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