Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C02
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    36   0.004
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   5.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   6.6  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 223 IINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQ-KVKLLKCSX 399
           +I  V+     K    T  I    +++ ++     L S      C  C + KVK  +C+ 
Sbjct: 5   LIASVILPEFGKGTVATDNIPIGKIIIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAA 64

Query: 400 CQFVYYCGRSC 432
           C+ ++YC + C
Sbjct: 65  CKIIHYCSKGC 75


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 136 FNSTRSRLFKNWKLIYIPLKHSYNLIYKY 222
           F +   R+  N   I I  KH+Y++ +KY
Sbjct: 234 FKAWGKRIMNNMPYIEITSKHNYDIDFKY 262


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 289 ADLLLSEQPFAYVLSSKEQG 348
           AD++L++  FA +LS+ E+G
Sbjct: 656 ADMILTDDSFATILSAVEEG 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,039
Number of Sequences: 5004
Number of extensions: 29337
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)