Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C02
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056...    52   2e-07
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389...    32   0.23 
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699...    32   0.23 
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    28   3.7  
01_06_0827 + 32260313-32260525,32261862-32262716                       28   3.7  
02_01_0715 - 5346036-5346557                                           27   6.5  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     27   8.6  
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    27   8.6  

>03_05_0841 -
           28104977-28105142,28105439-28105502,28105586-28105655,
           28105743-28105852,28106217-28106295,28106610-28106691,
           28106791-28106879,28107351-28107425,28107728-28107862,
           28108018-28108163,28108380-28108491
          Length = 375

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 286 PADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKLLKCSXCQFVYYCGRSC 432
           P ++++S++P+A   +    G+ CDNC     L KCS C+  +YCG +C
Sbjct: 37  PGEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAWYCGSAC 85


>04_03_0970 +
           21338072-21338074,21338192-21338240,21338688-21338970,
           21339570-21339705,21339761-21339769
          Length = 159

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 181 YIPLKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNR 354
           Y+    S+   Y Y+ ND +  +R+ + N  SEI PA L  S +P      S   G+R
Sbjct: 54  YVRETFSWQYYYWYLTNDGIEHLRN-YLNLPSEIVPATLKKSARPPGRPFGSGPPGDR 110


>02_04_0177 +
           20669053-20669055,20669150-20669198,20669680-20669962,
           20670526-20670661,20671014-20671094
          Length = 183

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 181 YIPLKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNR 354
           Y+    S+   Y Y+ ND +  +R+ + N  SEI PA L  S +P      S   G+R
Sbjct: 54  YVRETFSWQYYYWYLTNDGIEHLRN-YLNLPSEIVPATLKKSARPPGRPFGSGPPGDR 110


>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 100 QVASEAAYKISYFNSTRSRLFKNWKLIYIPLKHSYNL-IYKYIINDVV 240
           +VAS+ +Y + YF  T      NW+++    K  Y+L ++  + ND V
Sbjct: 201 KVASDGSYAVQYFEKTFPLSRANWEMLQ---KDEYDLQVWCILFNDSV 245


>01_06_0827 + 32260313-32260525,32261862-32262716
          Length = 355

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 319 AYVLSSKEQGNRCDNCLQKVKLLKCSXCQFVYYCG 423
           A V+  K   NRC +C +KV LL  +      YCG
Sbjct: 283 ATVVEKKAPANRCASCKKKVGLLGFACRCGATYCG 317


>02_01_0715 - 5346036-5346557
          Length = 173

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 271 TSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKL 384
           T  ++P D+  + +  A V   KE  NRC  C ++V L
Sbjct: 86  TLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGL 123


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 QKVKLLKCSXCQFVYYCGRSC 432
           +K +  +CS C  V YC R+C
Sbjct: 315 RKHEFRRCSVCSGVIYCSRAC 335


>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 331 SSKEQGNRCDNCLQKVKLLKCSXCQFVYYCGRSC 432
           S++ + + C  C    K  +CS C+ V YC   C
Sbjct: 24  SARPEYHECATCHGPAKT-RCSRCKSVRYCSGKC 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,509,128
Number of Sequences: 37544
Number of extensions: 152348
Number of successful extensions: 318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)