BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_C02 (433 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 52 2e-07 04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 32 0.23 02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 32 0.23 03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 28 3.7 01_06_0827 + 32260313-32260525,32261862-32262716 28 3.7 02_01_0715 - 5346036-5346557 27 6.5 02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 27 8.6 02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 27 8.6 >03_05_0841 - 28104977-28105142,28105439-28105502,28105586-28105655, 28105743-28105852,28106217-28106295,28106610-28106691, 28106791-28106879,28107351-28107425,28107728-28107862, 28108018-28108163,28108380-28108491 Length = 375 Score = 52.4 bits (120), Expect = 2e-07 Identities = 18/49 (36%), Positives = 30/49 (61%) Frame = +1 Query: 286 PADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKLLKCSXCQFVYYCGRSC 432 P ++++S++P+A + G+ CDNC L KCS C+ +YCG +C Sbjct: 37 PGEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAWYCGSAC 85 >04_03_0970 + 21338072-21338074,21338192-21338240,21338688-21338970, 21339570-21339705,21339761-21339769 Length = 159 Score = 31.9 bits (69), Expect = 0.23 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 181 YIPLKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNR 354 Y+ S+ Y Y+ ND + +R+ + N SEI PA L S +P S G+R Sbjct: 54 YVRETFSWQYYYWYLTNDGIEHLRN-YLNLPSEIVPATLKKSARPPGRPFGSGPPGDR 110 >02_04_0177 + 20669053-20669055,20669150-20669198,20669680-20669962, 20670526-20670661,20671014-20671094 Length = 183 Score = 31.9 bits (69), Expect = 0.23 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 181 YIPLKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNR 354 Y+ S+ Y Y+ ND + +R+ + N SEI PA L S +P S G+R Sbjct: 54 YVRETFSWQYYYWYLTNDGIEHLRN-YLNLPSEIVPATLKKSARPPGRPFGSGPPGDR 110 >03_05_0932 + 28924891-28924935,28925982-28926062,28926464-28926512, 28926599-28926677,28926762-28926921,28927307-28927440, 28927814-28927882,28928064-28928151,28928396-28928471, 28929267-28929340,28929478-28929585,28929858-28930160, 28930483-28930587,28930670-28930750,28930838-28931852, 28932086-28932201 Length = 860 Score = 27.9 bits (59), Expect = 3.7 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 100 QVASEAAYKISYFNSTRSRLFKNWKLIYIPLKHSYNL-IYKYIINDVV 240 +VAS+ +Y + YF T NW+++ K Y+L ++ + ND V Sbjct: 201 KVASDGSYAVQYFEKTFPLSRANWEMLQ---KDEYDLQVWCILFNDSV 245 >01_06_0827 + 32260313-32260525,32261862-32262716 Length = 355 Score = 27.9 bits (59), Expect = 3.7 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +1 Query: 319 AYVLSSKEQGNRCDNCLQKVKLLKCSXCQFVYYCG 423 A V+ K NRC +C +KV LL + YCG Sbjct: 283 ATVVEKKAPANRCASCKKKVGLLGFACRCGATYCG 317 >02_01_0715 - 5346036-5346557 Length = 173 Score = 27.1 bits (57), Expect = 6.5 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 271 TSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKL 384 T ++P D+ + + A V KE NRC C ++V L Sbjct: 86 TLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGL 123 >02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 Length = 379 Score = 26.6 bits (56), Expect = 8.6 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 370 QKVKLLKCSXCQFVYYCGRSC 432 +K + +CS C V YC R+C Sbjct: 315 RKHEFRRCSVCSGVIYCSRAC 335 >02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931, 8137117-8137271,8137363-8137451,8137623-8137967, 8139046-8139169,8139424-8139581,8139673-8139757, 8140094-8140306,8141314-8141375,8141466-8141951, 8142472-8142568 Length = 883 Score = 26.6 bits (56), Expect = 8.6 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +1 Query: 331 SSKEQGNRCDNCLQKVKLLKCSXCQFVYYCGRSC 432 S++ + + C C K +CS C+ V YC C Sbjct: 24 SARPEYHECATCHGPAKT-RCSRCKSVRYCSGKC 56 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,509,128 Number of Sequences: 37544 Number of extensions: 152348 Number of successful extensions: 318 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 318 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 814473264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -