Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_C02
(433 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 65 3e-11
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08) 46 1e-05
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 44 7e-05
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 44 7e-05
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 42 2e-04
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 30 0.71
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 30 0.93
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 29 1.6
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 29 2.2
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039) 29 2.2
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 29 2.2
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16) 28 2.8
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7) 27 5.0
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_49411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_34600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8) 27 8.7
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 244 EMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVK-LLKCSXCQFVYYC 420
E + + +K D +LSEQP Y+LS+ +G RCD CL+K+ L +CS C+F YC
Sbjct: 14 ESKGRGLRAAKPLKSGDTILSEQPVVYMLSNMLRGQRCDFCLEKLSDLQRCSRCKFARYC 73
Query: 421 GRSC 432
G SC
Sbjct: 74 GASC 77
>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
Length = 771
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 250 RSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQK-VKLLKCSXCQFVYYCGR 426
+ +F +SEI+ D L++E+P++ VL + C+ C + V + C+ C V YC
Sbjct: 296 QGRFLQASSEIRAGDTLIAEEPYSAVLLPENAKTHCECCYKSLVAPVPCNHCSSVLYCSA 355
Query: 427 SC 432
+C
Sbjct: 356 AC 357
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 244 EMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKL-LKCSXCQFVYYC 420
E + + +I D+LL E+PFA VL ++ + C C + L CS C V YC
Sbjct: 40 EEKGRHTIAARDINIGDVLLVEKPFASVLLQEQSKSHCHQCFVHILAPLPCSYCTTVRYC 99
Query: 421 GRSC 432
C
Sbjct: 100 SEKC 103
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 244 EMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKL-LKCSXCQFVYYC 420
E + + +I D+LL E+PFA VL ++ + C C + L CS C V YC
Sbjct: 244 EEKGRHTIAARDINIGDVLLVEKPFASVLLQEQSKSHCHQCFVHILAPLPCSYCTTVRYC 303
Query: 421 GRSC 432
C
Sbjct: 304 SEKC 307
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 325 VLSSKEQGNRCDNC-LQKVKLLKCSXCQFVYYCGRSC 432
V+ ++Q C NC L K++L KC C VYYC R+C
Sbjct: 118 VVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNC 154
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 355 CDNCLQKVKLLK-CSXCQFVYYCGRSC 432
C C QK +K C+ C+ V YC RSC
Sbjct: 14 CAVCRQKQNHMKICTRCRGVLYCSRSC 40
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 29.9 bits (64), Expect = 0.93
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 352 RCDNCLQ-KVKLLKCSXCQFVYYCGRSC 432
+C+ C V+L KCS C+ YC + C
Sbjct: 7 KCEFCYATNVQLQKCSRCKSTMYCSKDC 34
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 355 CDNCLQKVKLLKCSXCQFVYYCG 423
C+ C QK ++C+ C+ YYCG
Sbjct: 17 CELC-QKPAFVQCTDCRVTYYCG 38
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +1
Query: 139 NSTRSRLFKNWKLIYIPLKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSE 309
NS+ RL ++W ++I + S ++ YI + + F E+K D+++++
Sbjct: 800 NSSLLRLSRSWPAVWIKMGSSSACVWLYIWTLIAPVLTPLFEQYADELKGDDVMMND 856
>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
Length = 167
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 376 VKLLKCSXCQFVYYCGRSC 432
V+L C+ C+ V+YC +SC
Sbjct: 27 VRLSACTRCKEVFYCSKSC 45
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 376 VKLLKCSXCQFVYYCGRSC 432
V+L C+ C+ V+YC +SC
Sbjct: 401 VRLSACTRCKEVFYCSKSC 419
>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
Length = 807
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 214 YKYIINDVVXEMRSKFX-NTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVK 381
YK + V E R F S++ +++E+P + +SK++G +CD +K
Sbjct: 128 YKMSEDKKVAEKRELFIWKFDSDVSLLKEVIAEEPHKHPYASKDRGKKCDKIALNLK 184
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 355 CDNCLQKVKLLK-CSXCQFVYYCGRSC 432
C C QK +K CS C +YC + C
Sbjct: 55 CHKCSQKGGNMKQCSNCLSAWYCSKEC 81
>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
Length = 519
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 290 QIFCCQSNHSLMYYRPKNKETDVIIAYKKSNS*NVXDVNLF-ITVEDL 430
++FCCQ +YR K E D + K N+ DV F +T+ L
Sbjct: 80 RVFCCQGKKKSTFYR-KLDEYDDLEKMKGEKEKNITDVRDFNLTIPTL 126
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 355 CDNCLQKVKLLKCSXCQFVYYCGRSC 432
C C + KL CS C+ YC ++C
Sbjct: 1384 CVFCHRTGKLKTCSNCRVASYCDQTC 1409
>SB_49411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 223 IINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYV 327
I D+V +++S+ N + + D +E P+ YV
Sbjct: 151 IQQDIVTQVKSQVFNCVTAVNTRDAFETESPYPYV 185
>SB_34600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 190 LKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSEQPF 318
LK S+ L + ND + F T EIK A+ L SEQ F
Sbjct: 71 LKKSFLLEREIHENDTLQSFALNFGCTMEEIKRANNLYSEQDF 113
>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
Length = 815
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 340 EQGNRCDNCLQKVKLLKCSXCQFV 411
E RC NCLQ+ + +C C+ +
Sbjct: 651 EFSTRCYNCLQRTRGAQCMSCKSI 674
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,463
Number of Sequences: 59808
Number of extensions: 200673
Number of successful extensions: 447
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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