Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C02
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-2|CAD56600.1|  507|Caenorhabditis elegans Hypothetical pr...    37   0.005
Z81125-1|CAB03382.1|  501|Caenorhabditis elegans Hypothetical pr...    37   0.005
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    36   0.009
U64862-6|AAB52623.3|  560|Caenorhabditis elegans Temporarily ass...    32   0.20 
U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    30   0.62 
Z81526-4|CAB04267.2|  430|Caenorhabditis elegans Hypothetical pr...    30   0.82 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   4.4  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   4.4  
Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z81125-2|CAD56600.1|  507|Caenorhabditis elegans Hypothetical
           protein T22A3.4b protein.
          Length = 507

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 289 ADLLLSEQPFAYVLSSKEQGNRCDNCLQKV----KLLKCSXCQFVYYCGRSC 432
           A + + E PFA  + + +    C NCL+      KLL+C  C F  YC + C
Sbjct: 27  ARIKIFETPFATQVLNPKVSEFCANCLRGPAPGEKLLRCGGCNFSMYCSKEC 78


>Z81125-1|CAB03382.1|  501|Caenorhabditis elegans Hypothetical
           protein T22A3.4a protein.
          Length = 501

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 289 ADLLLSEQPFAYVLSSKEQGNRCDNCLQKV----KLLKCSXCQFVYYCGRSC 432
           A + + E PFA  + + +    C NCL+      KLL+C  C F  YC + C
Sbjct: 27  ARIKIFETPFATQVLNPKVSEFCANCLRGPAPGEKLLRCGGCNFSMYCSKEC 78


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 301 LSEQPFAYVLSSKEQGNRCDNCLQKV-KLLKCSXCQFVYYCGRSC 432
           L E  +A+ L+  +  + C+ CL  + +L KCS C+ + YC + C
Sbjct: 8   LHENVYAFALARDQVESYCNQCLTSMAELKKCSACRRLAYCSQEC 52


>U64862-6|AAB52623.3|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 226 protein.
          Length = 560

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 313 PFAYVLSSKEQGNRCDNCLQKVKLLKCSXCQFVYYCGRSC 432
           PFAY L    + + C  CL +   L C  C+   +C + C
Sbjct: 27  PFAYSLLDCTKDDYCWTCLGENVELTCEQCKVAKFCSKQC 66


>U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 301 TKDLQVLFRKLYX*ICSSFXQPRH*L-YICRLNCKNVLEECKLISNF 164
           +K L  LF +    +C  F  P+H    I   NCKN +EE K   NF
Sbjct: 90  SKTLFSLFFRFCASLCGVFPYPKHAATQITASNCKNKIEEYKRAFNF 136


>Z81526-4|CAB04267.2|  430|Caenorhabditis elegans Hypothetical
           protein F33H2.7 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +1

Query: 307 EQPFAYVLSSKEQGNRCDNCL------QKVKLLKCSXCQFVYYCGRSC 432
           EQP A VLS +     C  C       Q+ ++L C  C  V YC   C
Sbjct: 7   EQPLAAVLSPQFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKC 54


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 EQGNRCDNCLQKVKLLKCSXCQFVYY 417
           E G  C NC +  + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 EQGNRCDNCLQKVKLLKCSXCQFVYY 417
           E G  C NC +  + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 EQGNRCDNCLQKVKLLKCSXCQFVYY 417
           E G  C NC +  + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 EQGNRCDNCLQKVKLLKCSXCQFVYY 417
           E G  C NC +  + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411


>Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical
           protein K08E7.7 protein.
          Length = 729

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 190 LKHSYNLIYKYIINDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGN 351
           +K   +L +  +IN+++ +++S+F      IK    +L EQ   Y+  S+ + N
Sbjct: 672 MKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQ--LYIRRSENEHN 723


>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 355 CDNCLQKVKLLKCSXCQFVYY 417
           CD  L +++LL CS   FVY+
Sbjct: 171 CDMVLPELQLLDCSMTDFVYF 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,005,880
Number of Sequences: 27780
Number of extensions: 163590
Number of successful extensions: 431
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)