Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_C02
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ...    60   8e-10
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    36   0.009
At1g51960.1 68414.m05857 calmodulin-binding family protein conta...    29   1.8  
At3g46760.1 68416.m05076 protein kinase family protein contains ...    28   3.1  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    27   7.2  
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    26   9.6  
At3g16490.1 68416.m02105 calmodulin-binding family protein conta...    26   9.6  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    26   9.6  
At2g19640.2 68415.m02295 SET domain-containing protein contains ...    26   9.6  
At2g19640.1 68415.m02294 SET domain-containing protein contains ...    26   9.6  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    26   9.6  

>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
           SET domain-containing protein contains Pfam profiles
           PF00856: SET domain,  PF01753: MYND zinc finger (ZnF)
           domain; confirmed by cDNA (Paola Vittorioso--accession
           not assigned yet (paola.vittorioso@uniroma1.it)
          Length = 480

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 25/69 (36%), Positives = 43/69 (62%)
 Frame = +1

Query: 226 INDVVXEMRSKFXNTTSEIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKVKLLKCSXCQ 405
           ++++  + RS F  T  + +P +++LS++P+  V ++    +RCD C +   L KCS CQ
Sbjct: 15  VSNLPQKGRSLF--TARDFRPGEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQ 72

Query: 406 FVYYCGRSC 432
            V+YCG SC
Sbjct: 73  VVWYCGSSC 81


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 277 EIKPADLLLSEQPFAYVLSSKEQGNRCDNCLQKV--KLLKCSXCQFVYYCGRSC 432
           +I+ A ++  E+PF+ V+S   +   C  CL ++    + C  C    YC  SC
Sbjct: 237 DIEEASVIHVEEPFSVVISKSCRETHCHFCLNELPADTVPCPSCSIPVYCSESC 290


>At1g51960.1 68414.m05857 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 351

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -1

Query: 121 KRLRSLPGVLKIQFSIVGYIIFRKDATAII 32
           K LR+L G++K+Q  + GY++ RK A A++
Sbjct: 117 KALRALKGIVKLQALVRGYLV-RKRAAAML 145


>At3g46760.1 68416.m05076 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 337

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 115 AAYKISYFNSTRSRLFKNWKLIYIPLKHSYNLIYK 219
           AA +  Y NS    + + W+  Y P + SY  +YK
Sbjct: 11  AALRSMYVNSKYEEVREEWEEDYSPQRFSYKALYK 45


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 322 YVLSSKEQGNRCDNCLQKVK--LLKCSXCQFVYYCGRSC 432
           YV   KE   +C +    ++    KC  C  VYYC   C
Sbjct: 227 YVDKVKEDFGKCVSVANNLRWRYWKCHICSQVYYCFTDC 265


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 352 RCDNCLQKVKLLKCSXCQFVYYCGRSC 432
           RC  CL      +CS C+ V YC   C
Sbjct: 56  RCAVCLYPTTT-RCSQCKSVRYCSSKC 81


>At3g16490.1 68416.m02105 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 389

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 121 KRLRSLPGVLKIQFSIVGYIIFRKDATAI 35
           K LR+L G++K+Q  + GY++ ++ A  +
Sbjct: 124 KALRALKGLVKLQALVRGYLVRKRAAETL 152


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 355 CDNCLQKVKLLKCSXCQFVYYCGRSC 432
           C  C  K    KCS C+ V YC  +C
Sbjct: 64  CSVC-GKATTKKCSRCKSVRYCSAAC 88


>At2g19640.2 68415.m02295 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 398

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
 Frame = +1

Query: 250 RSKFXNTTSEIKPADLLLSEQPF----AYVLSSKEQGNRCDNCLQKVKLL---KCSXCQF 408
           R +       ++   ++L E P     A+   S      CD+C + +      KC  C  
Sbjct: 21  RGRSLVAAQSLRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAHQKCQSCSL 80

Query: 409 VYYCGRSC 432
           V +C  +C
Sbjct: 81  VSFCSPNC 88


>At2g19640.1 68415.m02294 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 341

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
 Frame = +1

Query: 250 RSKFXNTTSEIKPADLLLSEQPF----AYVLSSKEQGNRCDNCLQKVKLL---KCSXCQF 408
           R +       ++   ++L E P     A+   S      CD+C + +      KC  C  
Sbjct: 21  RGRSLVAAQSLRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAHQKCQSCSL 80

Query: 409 VYYCGRSC 432
           V +C  +C
Sbjct: 81  VSFCSPNC 88


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 370 QKVKLLKCSXCQFVYYCGRSC 432
           +K +  +CS C  V YC R+C
Sbjct: 313 RKHEFRRCSVCGVVNYCSRAC 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,194,381
Number of Sequences: 28952
Number of extensions: 140026
Number of successful extensions: 344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)