Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B23
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.9  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   7.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/48 (18%), Positives = 23/48 (47%)
 Frame = +2

Query: 296  YRESVCSSRLFSNSWSFIHGSLEFXNWKDKTLSXNDESENSCTRAYHC 439
            + E+   +++ + S + +HG  ++ N+  + L+     +   T   HC
Sbjct: 1147 FDENTKDTKITAASETILHGLKKYTNYSMEVLAYTSGGDGVRTTPIHC 1194


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 154 IH*IVTACVTI*FCTEIILLC 92
           +H +   C+   +C  IILLC
Sbjct: 277 MHLLFLLCIYYFYCALIILLC 297


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 129 LQSSFVLKLYCYVKI 85
           + SSFV K +CYV +
Sbjct: 30  INSSFVHKEHCYVLV 44


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 218 TLGATAQGNGSISPCXNDKRKISXKIYRES 307
           TLG    G G  SP    +R  + K YR S
Sbjct: 106 TLGRGDLGGGDTSPNSALQRARADKTYRRS 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,093
Number of Sequences: 336
Number of extensions: 2317
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)