BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_B23 (593 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14 SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25) 46 2e-05 SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7 SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 28 4.9 >SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3212 Score = 74.5 bits (175), Expect = 6e-14 Identities = 37/69 (53%), Positives = 42/69 (60%) Frame = +3 Query: 267 TTREKFHXKFTENPFVPLGCLATAGALSMGLWSFXTGKTRLSXQMMRVRILAQGLTIAAL 446 TT+EKF K ENPFVP+GC T AL GL SF G + MMR R++AQG TI AL Sbjct: 3093 TTKEKFARKVKENPFVPIGCALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQGSTIVAL 3152 Query: 447 VIGVVITTG 473 V G T G Sbjct: 3153 VGGCFATAG 3161 Score = 54.4 bits (125), Expect = 7e-08 Identities = 26/49 (53%), Positives = 33/49 (67%) Frame = +3 Query: 321 GCLATAGALSMGLWSFXTGKTRLSXQMMRVRILAQGLTIAALVIGVVIT 467 GC ATAGAL GL SF G ++ QMMR R+LAQG T+ A++ G+ T Sbjct: 3155 GCFATAGALVYGLLSFKRGNQKVQQQMMRARVLAQGSTLIAVIGGLGYT 3203 >SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25) Length = 103 Score = 46.4 bits (105), Expect = 2e-05 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +3 Query: 228 QLRKEMGASHHVXTTREKFHXKFTENPFVPLGCLATAGALSMGLWSF-XTGKTRLSXQMM 404 QL + T EK K PF+P+G L T A+ G+ ++ G S +M Sbjct: 9 QLSESWQTREERETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIM 68 Query: 405 RVRILAQGLTIAALVIGVVIT 467 R+R++AQ + ++++G+ IT Sbjct: 69 RLRVIAQSCVVGSIMVGMGIT 89 >SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 84 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/50 (24%), Positives = 24/50 (48%) Frame = +2 Query: 275 RKISXKIYRESVCSSRLFSNSWSFIHGSLEFXNWKDKTLSXNDESENSCT 424 R+I ++ RES C + + SW+ I ++ N D + + +C+ Sbjct: 31 REIKREVRRESTCLTPIIFCSWTIIQNNVVIRNQSDPSSPATSTTTITCS 80 >SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) Length = 1384 Score = 28.3 bits (60), Expect = 4.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = -1 Query: 470 CGDYYTNN*SSNGKPLCKNSHSHHLXRESCLSSXKTPKTHG 348 CG+ + ++ S+ KP C N HH +S K HG Sbjct: 761 CGNRFKHHGGSHSKPYCGNRFKHHGGSDSKSYCGNRFKHHG 801 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = -1 Query: 470 CGDYYTNN*SSNGKPLCKNSHSHHLXRESCLSSXKTP 360 CG+ + ++ S+ KP C N HH+ + TP Sbjct: 809 CGNRFRHHGGSDSKPYCGNRFRHHVTPTLNYTVAATP 845 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,046,094 Number of Sequences: 59808 Number of extensions: 261467 Number of successful extensions: 568 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 566 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1427401750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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