Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B23
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   6e-14
SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               46   2e-05
SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)                  28   4.9  

>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 37/69 (53%), Positives = 42/69 (60%)
 Frame = +3

Query: 267  TTREKFHXKFTENPFVPLGCLATAGALSMGLWSFXTGKTRLSXQMMRVRILAQGLTIAAL 446
            TT+EKF  K  ENPFVP+GC  T  AL  GL SF  G   +   MMR R++AQG TI AL
Sbjct: 3093 TTKEKFARKVKENPFVPIGCALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQGSTIVAL 3152

Query: 447  VIGVVITTG 473
            V G   T G
Sbjct: 3153 VGGCFATAG 3161



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 26/49 (53%), Positives = 33/49 (67%)
 Frame = +3

Query: 321  GCLATAGALSMGLWSFXTGKTRLSXQMMRVRILAQGLTIAALVIGVVIT 467
            GC ATAGAL  GL SF  G  ++  QMMR R+LAQG T+ A++ G+  T
Sbjct: 3155 GCFATAGALVYGLLSFKRGNQKVQQQMMRARVLAQGSTLIAVIGGLGYT 3203


>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 228 QLRKEMGASHHVXTTREKFHXKFTENPFVPLGCLATAGALSMGLWSF-XTGKTRLSXQMM 404
           QL +         T  EK   K    PF+P+G L T  A+  G+ ++   G    S  +M
Sbjct: 9   QLSESWQTREERETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIM 68

Query: 405 RVRILAQGLTIAALVIGVVIT 467
           R+R++AQ   + ++++G+ IT
Sbjct: 69  RLRVIAQSCVVGSIMVGMGIT 89


>SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 275 RKISXKIYRESVCSSRLFSNSWSFIHGSLEFXNWKDKTLSXNDESENSCT 424
           R+I  ++ RES C + +   SW+ I  ++   N  D +      +  +C+
Sbjct: 31  REIKREVRRESTCLTPIIFCSWTIIQNNVVIRNQSDPSSPATSTTTITCS 80


>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
          Length = 1384

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 470 CGDYYTNN*SSNGKPLCKNSHSHHLXRESCLSSXKTPKTHG 348
           CG+ + ++  S+ KP C N   HH   +S        K HG
Sbjct: 761 CGNRFKHHGGSHSKPYCGNRFKHHGGSDSKSYCGNRFKHHG 801



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 470 CGDYYTNN*SSNGKPLCKNSHSHHLXRESCLSSXKTP 360
           CG+ + ++  S+ KP C N   HH+      +   TP
Sbjct: 809 CGNRFRHHGGSDSKPYCGNRFRHHVTPTLNYTVAATP 845


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,094
Number of Sequences: 59808
Number of extensions: 261467
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)