Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B23
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-3|CAA92488.1|  144|Caenorhabditis elegans Hypothetical pr...    47   9e-06
AF077532-1|AAC26268.1|  301|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z68220-3|CAA92488.1|  144|Caenorhabditis elegans Hypothetical
           protein T20D3.6 protein.
          Length = 144

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 26/58 (44%), Positives = 34/58 (58%)
 Frame = +3

Query: 291 KFTENPFVPLGCLATAGALSMGLWSFXTGKTRLSXQMMRVRILAQGLTIAALVIGVVI 464
           K   NP VPLG LAT G L   + +     +R +   MR R++AQG T+AALV G V+
Sbjct: 51  KALNNPLVPLGMLATTGCLIGMMVATLRRSSRGAQYFMRGRVVAQGFTVAALVGGAVM 108


>AF077532-1|AAC26268.1|  301|Caenorhabditis elegans Hypothetical
           protein F40B1.1 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 284 SXKIYRESVCSSRLFSNSWSFIHGSLEFXNW 376
           S K YRE    +  FSN+ S+ +G+ EF +W
Sbjct: 79  SGKAYREDDNFNFQFSNAHSYGNGTTEFISW 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,950
Number of Sequences: 27780
Number of extensions: 203590
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)