BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_B23 (593 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 56 1e-08 At5g28820.1 68418.m03543 hypothetical protein 28 5.4 >At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 finger protein RHX1a [Arabidopsis thaliana] GI:3790591; contains Pfam profiles PF00097: Zinc finger C3HC4 type (RING finger), PF04588: Hypoxia induced protein conserved region Length = 349 Score = 56.4 bits (130), Expect = 1e-08 Identities = 26/53 (49%), Positives = 34/53 (64%) Frame = +3 Query: 291 KFTENPFVPLGCLATAGALSMGLWSFXTGKTRLSXQMMRVRILAQGLTIAALV 449 K NP VPLG L TAG L+ GL SF G ++L +MR R++ QG T+A +V Sbjct: 16 KRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQGATVALMV 68 >At5g28820.1 68418.m03543 hypothetical protein Length = 172 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 168 LISKTKKMSTEPEPTDLHWVQLRKEMGASHHVXTTREK 281 ++ ++ + P DL VQ+ +MG SH V ++ EK Sbjct: 65 IVVDASQVGDDDGPHDLSHVQILDDMGGSHDVFSSLEK 102 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,336,339 Number of Sequences: 28952 Number of extensions: 178316 Number of successful extensions: 366 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 363 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 366 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1180950720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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