BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_B20 (654 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 238 6e-64 SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 28 1.0 SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 5.5 SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 5.5 SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.2 SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 25 7.2 SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.5 SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 9.5 >SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosaccharomyces pombe|chr 2|||Manual Length = 382 Score = 238 bits (582), Expect = 6e-64 Identities = 108/168 (64%), Positives = 135/168 (80%) Frame = +3 Query: 147 FLFTSESVGEGHPDKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326 FLFTSESVGEGHPDK+CDQISDAIL A L DP +KVACET +KTGMV++ GEIT+++ + Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64 Query: 327 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDXGL 506 DYQKV+R T+K IGYDDS KGFDYKTC+V++A+ QQSP+IA G+H + EE+GAGD G+ Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124 Query: 507 MFGYATXXTEXCMPLTVVLAHKLNXKIAELXRNGXFWWARPXSKTQVT 650 MFGYAT T +PLT++LAHKLN ++ R+G W RP +KTQVT Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVT 172 >SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 749 Score = 28.3 bits (60), Expect = 1.0 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Frame = +3 Query: 51 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILXA 227 W + K M S T S+D E S+F S+SV E CD+ SD L Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692 Query: 228 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 326 K E L+ G+ TS+ ++ Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720 >SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 391 Score = 25.8 bits (54), Expect = 5.5 Identities = 11/42 (26%), Positives = 21/42 (50%) Frame = -2 Query: 419 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 294 EH+ C+ + G ++++ DR + I +S C F T+ Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142 >SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 342 Score = 25.8 bits (54), Expect = 5.5 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 183 PDKMCDQISDAILXA-HLNQDPDAKVACETITKTGM 287 P K ++ D ++ + H N DPDAK+A ++K M Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215 >SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 565 Score = 25.4 bits (53), Expect = 7.2 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 203 LVAHFVWMTLANRFRCEQKY*SIFHII 123 L+ HFVW + CE+K+ S H++ Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420 >SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 266 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 315 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQ 434 + N DY K+ E VK G D+ K C ++ L Q+ Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145 >SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccharomyces pombe|chr 2|||Manual Length = 605 Score = 25.0 bits (52), Expect = 9.5 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 364 ICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRC 227 I L++ TF + LD++ HK+ P +V A F GS F C Sbjct: 351 IRLSLEEATFNQIIMELDIL--HKAVSPYIVDFYGAFFVEGSVFIC 394 >SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pombe|chr 3|||Manual Length = 412 Score = 25.0 bits (52), Expect = 9.5 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 130 WKMDQYFCSHRNLLARVIQTKC 195 W + + F S+R L A I+T C Sbjct: 27 WNISKTFLSYRTLTALAIETSC 48 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,632,505 Number of Sequences: 5004 Number of extensions: 51664 Number of successful extensions: 151 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 151 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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