Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_B20
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 273 9e-74
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 243 1e-64
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 1e-50
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 5e-37
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 82 4e-16
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 69 3e-12
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.62
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 29 3.3
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 273 bits (669), Expect = 9e-74
Identities = 127/170 (74%), Positives = 142/170 (83%)
Frame = +3
Query: 141 SVFLFTSESVGEGHPDKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKA 320
+ FLFTSESVGEGHPDKMCDQISDAIL AHL QDP+AKVACET+ KTGM+LLCGEITS A
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNA 88
Query: 321 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDX 500
VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL QQS +IA GVH R +E+VGAGD
Sbjct: 89 VVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEEDVGAGDQ 148
Query: 501 GLMFGYATXXTEXCMPLTVVLAHKLNXKIAELXRNGXFWWARPXSKTQVT 650
GLMFGYAT TE MPLTVVLAHK+N K+AE R+G WARP SKTQVT
Sbjct: 149 GLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVT 198
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 243 bits (594), Expect = 1e-64
Identities = 117/176 (66%), Positives = 130/176 (73%)
Frame = +3
Query: 123 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCG 302
Y D FLFTSESV EGH DKMCDQISDA+L AHL QDP AKVACET TKTG+VLL G
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103
Query: 303 EITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEE 482
EITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH NR D+E
Sbjct: 104 EITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDE 163
Query: 483 VGAGDXGLMFGYATXXTEXCMPLTVVLAHKLNXKIAELXRNGXFWWARPXSKTQVT 650
+GAGD GLMFGYAT TE MPLT VLAHKL ++AE + W P KTQVT
Sbjct: 164 IGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVT 219
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 196 bits (478), Expect = 1e-50
Identities = 88/128 (68%), Positives = 106/128 (82%)
Frame = +3
Query: 267 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNI 446
++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A+ QQSP+I
Sbjct: 2 SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61
Query: 447 AAGVHXNRNDEEVGAGDXGLMFGYATXXTEXCMPLTVVLAHKLNXKIAELXRNGXFWWAR 626
A GVH R+DE++GAGD GLMFGYAT T+ MPLTVVLAH LN ++A+ RNG W R
Sbjct: 62 AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVR 121
Query: 627 PXSKTQVT 650
P SKTQVT
Sbjct: 122 PDSKTQVT 129
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 151 bits (366), Expect = 5e-37
Identities = 67/82 (81%), Positives = 76/82 (92%)
Frame = +3
Query: 141 SVFLFTSESVGEGHPDKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKA 320
+ FLFTSESVGEGHPDKMCDQISDAIL AHL QDP+AKVACE++ KTGM+++CGEITS A
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLA 68
Query: 321 NVDYQKVVRETVKHIGYDDSSK 386
NVDYQKVVR+T+K IGYDDSSK
Sbjct: 69 NVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +3
Query: 141 SVFLFTSESVGEGHPDKMCDQISDAILXAHLNQDPDAKVAC 263
+ FLFTSESVGEGHPDKMCDQISDAIL AHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +3
Query: 477 EEVGAGDXGLMFGYATXXTEXCMPLTVVLAHKLNXKIAELXRNGXFWWARPXSKTQVT 650
E+ GAGD GLMFGYAT T+ MP V AH+L + +EL RNG W RP +K+QVT
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVT 65
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 300 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 401
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 RRTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 159
R VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 416 RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 RRTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 159
R VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 70 RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 72 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILXAHLNQDPD 248
MP G +K N + D D +L +S+ + D++C + I AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 72 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILXAHLNQDPD 248
MP + G +K N + D D +L S+ + D++C + I AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 268 VSHATFASGS*FRCAXRIASLIWSHILSG 182
+S + A + FRC+ R S++W H+ +G
Sbjct: 287 ISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,566,558
Number of Sequences: 59808
Number of extensions: 424959
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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