Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B15
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04...    28   4.7  
At3g45470.1 68416.m04910 zinc finger protein-related contains lo...    27   8.2  

>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 607

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 444 NIYRVNKKANYKQRNFWTSINQIQNYGTETVERATNMTLTFKLRAH 307
           N+Y+ ++   Y    F + I +++  GT+T E  T + + F  + H
Sbjct: 269 NLYKYSELHCYFVSKFVSKIGKVRGVGTQTKELVTKINMLFTKQYH 314


>At3g45470.1 68416.m04910 zinc finger protein-related contains low
           similarity to Swiss-Prot:O76924 ariadne-2 protein
           (Ari-2) [Drosophila melanogaster]
          Length = 222

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 484 RHCLKMTHVIKLNNGSNFVT 543
           R C+K  H+I+LN G N +T
Sbjct: 165 RQCVKCRHLIELNQGCNHMT 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,235,840
Number of Sequences: 28952
Number of extensions: 223978
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)