Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B13
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    29   1.4  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    28   2.5  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    27   7.5  
At2g01920.1 68415.m00126 epsin N-terminal homology (ENTH) domain...    27   7.5  
At1g76920.1 68414.m08954 F-box family protein (FBX3) contains si...    26   10.0 
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    26   10.0 
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina...    26   10.0 

>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 212 EVPAIPEAKKDDIAPXDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 388
           E P + E KKD+ AP ++ +                  K  E+ + + + A + V EE  
Sbjct: 73  ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129

Query: 389 AQPEDSKTEVQATV 430
            + E+ K  V+A+V
Sbjct: 130 PEAEEEKPAVEASV 143


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 311 FLRFSLQERFPVSRYRSLXGLYRPFWPLV 225
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 209 DEVPAIPEAKKDDIAP 256
           D+  +IPEAK+DD AP
Sbjct: 197 DDTASIPEAKEDDAAP 212


>At2g01920.1 68415.m00126 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to clathrin
           assembly protein AP180 (GI:6492344) [Xenopus laevis]
          Length = 312

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 247 IVLFGLWYSGYLVVTNWSRFGFLLFSGSRYFGRFNRVXTF 128
           ++L GL++SG + V +  R  F L    R   RF+R   F
Sbjct: 88  MLLHGLFFSGIMTVDSIGRLPFDLSGFGRRKSRFSRTGRF 127


>At1g76920.1 68414.m08954 F-box family protein (FBX3) contains
           similarity to stamina pistilloidia GI:4101570, the pea
           ortholog of Fim and UFO from [Pisum sativum]
          Length = 374

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 76  HWHXQTHSREGICTIVRPXMHKY 8
           H H   HS  G  T +RP +H Y
Sbjct: 65  HHHSHRHSGNGHATNIRPYIHVY 87


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 323 AKSSEIPDAEAKSADIKVEEPAAQPE 400
           A   E P AE  ++   VEE AAQPE
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPE 333


>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 769

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 175 FSGSRYFGRFNRVXTFGRDXXNWLNGNYVLFLRHW 71
           ++G+R+ G + +    GR   +W NG+  LF   W
Sbjct: 126 YNGNRFIGNWKKGKMSGRGVMSWANGD--LFNGFW 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,155,434
Number of Sequences: 28952
Number of extensions: 105356
Number of successful extensions: 291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)