Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_B12
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 87 1e-17
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 86 2e-17
07_03_0990 + 23173868-23174200 48 7e-06
01_06_1364 + 36684937-36685281 48 7e-06
07_03_0989 + 23161020-23161412 47 1e-05
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 46 3e-05
07_03_0988 + 23160028-23160360 40 0.002
01_04_0034 + 15318509-15319567 31 0.81
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444... 28 7.5
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/90 (50%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Frame = +1
Query: 127 DEKK-----GENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFD 291
DEKK G HINLKV QD V F+IK+ T L+KLMNAYCDR + ++ + F FD
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67
Query: 292 GQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
G+ +N TP L ME GD I QTGG
Sbjct: 68 GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/82 (50%), Positives = 49/82 (59%)
Frame = +1
Query: 136 KGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPINXND 315
+G HINLKV QD V F+IK+ T L+KLMNAYCDR + M + F FDG+ +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74
Query: 316 TPTSLXMEXGDTIXVYQQQTGG 381
TP L ME GD I QTGG
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGG 96
>07_03_0990 + 23173868-23174200
Length = 110
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 136 KGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFXFDGQPINX 309
K E++ LKV D V ++ L+ LM+ Y DRA +Q RF +DG+ ++
Sbjct: 25 KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84
Query: 310 NDTPTSLXMEXGDTIXVYQQQTGGVS 387
TP L ME GD + +++ GG +
Sbjct: 85 WQTPAELDMEDGDEVDFFEELIGGAA 110
>01_06_1364 + 36684937-36685281
Length = 114
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 112 NLKMADEKKGENEH-INLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-X 285
+LK+ + G I + V Q A V F IK LR++M+ YC + L + V+F
Sbjct: 17 DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76
Query: 286 FDGQPINXNDTPTSLXMEXGDTIXVYQQQTGGVSL 390
DG+ + TP + ++ G TI + Q GG +
Sbjct: 77 DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111
>07_03_0989 + 23161020-23161412
Length = 130
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 148 EHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFXFDGQPINXNDTP 321
E++ LKV D V + + L+ LM+ Y DR+ +Q RF FDG+ + TP
Sbjct: 37 EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96
Query: 322 TSLXMEXGDTIXVYQQQTGGVS 387
L ME GD + +++ GG +
Sbjct: 97 AELQMEDGDEVNFFEELIGGAA 118
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 106 HINLKMADEKKGENEHINLKVLXQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 282
HI+L + E+ E + + V QD A QF++ K KL AY + LS+ + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214
Query: 283 XFDGQPINXNDTPTSLXMEXGDTIXV 360
FDG ++ TP L +E D + V
Sbjct: 215 AFDGDKVDAESTPEDLGLEDEDMVEV 240
>07_03_0988 + 23160028-23160360
Length = 110
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 154 INLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFXFDGQPINXNDTPTSL 330
I LKV+ Q++ ++ I+ L+ +M+ Y +A ++ F FDG + + TP L
Sbjct: 21 ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80
Query: 331 XMEXGDTIXVYQQQTGG 381
M GDT+ + GG
Sbjct: 81 EMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 154 INLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFXFDGQPINXNDTPTS 327
+ + +L A + +++ L+ LM+ R SM ++G+ + + TP
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335
Query: 328 LXMEXGDTIXVYQQQTG 378
L +E GDTI +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352
>03_05_1062 -
30043596-30043811,30044083-30044178,30044387-30044448,
30044990-30045023,30045220-30046173
Length = 453
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 575 ETHNALRSSAMLLCVTKLLXNTFTDTNDV 489
E H +L+ +AML+C K + TD DV
Sbjct: 414 ELHKSLQEAAMLVCEQKQANSPATDNGDV 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,918
Number of Sequences: 37544
Number of extensions: 234151
Number of successful extensions: 343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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