SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B12
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782     87   1e-17
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532     86   2e-17
07_03_0990 + 23173868-23174200                                         48   7e-06
01_06_1364 + 36684937-36685281                                         48   7e-06
07_03_0989 + 23161020-23161412                                         47   1e-05
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308...    46   3e-05
07_03_0988 + 23160028-23160360                                         40   0.002
01_04_0034 + 15318509-15319567                                         31   0.81 
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    28   7.5  

>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
          Length = 101

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 45/90 (50%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
 Frame = +1

Query: 127 DEKK-----GENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFD 291
           DEKK     G   HINLKV  QD   V F+IK+ T L+KLMNAYCDR  + ++ + F FD
Sbjct: 8   DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67

Query: 292 GQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
           G+ +N   TP  L ME GD I     QTGG
Sbjct: 68  GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97


>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
          Length = 100

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/82 (50%), Positives = 49/82 (59%)
 Frame = +1

Query: 136 KGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPINXND 315
           +G   HINLKV  QD   V F+IK+ T L+KLMNAYCDR  + M  + F FDG+ +    
Sbjct: 15  EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74

Query: 316 TPTSLXMEXGDTIXVYQQQTGG 381
           TP  L ME GD I     QTGG
Sbjct: 75  TPDELEMEDGDEIDAMLHQTGG 96


>07_03_0990 + 23173868-23174200
          Length = 110

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +1

Query: 136 KGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFXFDGQPINX 309
           K   E++ LKV   D   V   ++    L+ LM+ Y DRA   +Q    RF +DG+ ++ 
Sbjct: 25  KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84

Query: 310 NDTPTSLXMEXGDTIXVYQQQTGGVS 387
             TP  L ME GD +  +++  GG +
Sbjct: 85  WQTPAELDMEDGDEVDFFEELIGGAA 110


>01_06_1364 + 36684937-36685281
          Length = 114

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +1

Query: 112 NLKMADEKKGENEH-INLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-X 285
           +LK+   + G     I + V  Q  A V F IK    LR++M+ YC +  L  + V+F  
Sbjct: 17  DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76

Query: 286 FDGQPINXNDTPTSLXMEXGDTIXVYQQQTGGVSL 390
            DG+ +    TP  + ++ G TI +   Q GG  +
Sbjct: 77  DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111


>07_03_0989 + 23161020-23161412
          Length = 130

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = +1

Query: 148 EHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFXFDGQPINXNDTP 321
           E++ LKV   D   V   + +   L+ LM+ Y DR+   +Q    RF FDG+ +    TP
Sbjct: 37  EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96

Query: 322 TSLXMEXGDTIXVYQQQTGGVS 387
             L ME GD +  +++  GG +
Sbjct: 97  AELQMEDGDEVNFFEELIGGAA 118


>01_05_0651 +
           23930455-23930457,23930543-23930636,23930764-23930849,
           23930930-23931108,23932275-23932482,23932808-23932975
          Length = 245

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +1

Query: 106 HINLKMADEKKGENEHINLKVLXQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 282
           HI+L  + E+    E + + V  QD A   QF++ K     KL  AY  +  LS+  + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214

Query: 283 XFDGQPINXNDTPTSLXMEXGDTIXV 360
            FDG  ++   TP  L +E  D + V
Sbjct: 215 AFDGDKVDAESTPEDLGLEDEDMVEV 240


>07_03_0988 + 23160028-23160360
          Length = 110

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 154 INLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFXFDGQPINXNDTPTSL 330
           I LKV+ Q++  ++  I+    L+ +M+ Y  +A  ++     F FDG  +  + TP  L
Sbjct: 21  ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80

Query: 331 XMEXGDTIXVYQQQTGG 381
            M  GDT+  +    GG
Sbjct: 81  EMVDGDTVDFFPVMIGG 97


>01_04_0034 + 15318509-15319567
          Length = 352

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 154 INLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFXFDGQPINXNDTPTS 327
           + + +L    A   + +++   L+ LM+    R   SM        ++G+ +  + TP  
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335

Query: 328 LXMEXGDTIXVYQQQTG 378
           L +E GDTI    +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352


>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 575 ETHNALRSSAMLLCVTKLLXNTFTDTNDV 489
           E H +L+ +AML+C  K   +  TD  DV
Sbjct: 414 ELHKSLQEAAMLVCEQKQANSPATDNGDV 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,918
Number of Sequences: 37544
Number of extensions: 234151
Number of successful extensions: 343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -