Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B12
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)             35   0.067
SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    29   3.3  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     28   7.7  

>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
          Length = 333

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 127 DEKKGENEHINLKVLXQDNAIVQFKIKKHT--PLRKLMNAYCDRAGLSMQVVRFXFDGQP 300
           D++   N HI +  L  +  ++ FK  KHT   ++ L+ A   + G      R  F+GQ 
Sbjct: 64  DDQIVSNPHIAVLTLTGERILIPFKSPKHTIIEVKYLIEA---KGGYPKDQQRLVFNGQV 120

Query: 301 INXNDTPTSLXMEXGDTIXVYQQQTGG 381
           ++  DT   + +  G T+ +  +  GG
Sbjct: 121 LSDEDTFEKVGIFAGATLHLIVRLLGG 147


>SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 6   TTPSHKLSFTRSFVKTDTKSVCQFTV 83
           +TP  K +FTR FV+++ ++ C++ +
Sbjct: 78  STPKGKTNFTRKFVRSEEQTTCEYRI 103


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 49  KQIPNQFVNSQFCINS-F*NHINLKMADEKKGENEHINLKVLXQDNAIVQFKIKKH 213
           K   NQ  + Q CI   F    NLK+AD+  G +  +  KV     A VQ  +K++
Sbjct: 201 KYYENQISSDQTCIKEWFETEENLKIADDSVGISFQLFFKVRELVEAEVQMDLKQY 256


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 336  GXGRHNXGLPTADRRSVPSVNLIILRIDHLQWVKINEVYPSQALTLS 476
            G G+ + GL TA   ++PSV L    +DHL  V + E   +  L ++
Sbjct: 977  GDGKEHFGLKTALHANMPSVWLPYTTLDHL-LVALGEASENSTLAIA 1022


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,247
Number of Sequences: 59808
Number of extensions: 309015
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)