Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B12
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    85   4e-17
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    85   4e-17
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    85   4e-17
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    31   0.54 
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        28   6.7  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    28   6.7  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    28   6.7  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
 Frame = +1

Query: 121 MADE--KKGEN-EHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFD 291
           MAD+  + G+N E+I +KV+ QD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 292 GQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
           G+ IN +DTP +L ME  D I VYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
 Frame = +1

Query: 121 MADE--KKGEN-EHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFD 291
           MAD+  + G+N E+I +KV+ QD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 292 GQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
           G+ IN +DTP +L ME  D I VYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
 Frame = +1

Query: 121 MADE--KKGEN-EHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFD 291
           MAD+  + G+N E+I +KV+ QD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 292 GQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
           G+ IN +DTP +L ME  D I VYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
            protein H04J21.1 protein.
          Length = 1032

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 175  QDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPINXNDTPTSLXM 336
            Q   ++   ++++  L +L     ++ G+  + +R  ++G+PI+  DTP SL +
Sbjct: 930  QQLEVLHSHVEENEKLGRLDKRISEKIGVDAKFIRVTYNGRPIDPMDTPYSLGL 983


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 106 HINLKMADEKKGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLS 264
           H  ++  DE + + +   LKV   D A+    + +  P+ +LM   C++ G+S
Sbjct: 71  HYLVRNKDEIEYKRKIRLLKVRMLDGAVKTISVDESQPVSQLMMTVCNKIGIS 123


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 106 HINLKMADEKKGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLS 264
           H  ++  DE + + +   LKV   D A+    + +  P+ +LM   C++ G+S
Sbjct: 71  HYLVRNKDEIEYKRKIRLLKVRMLDGAVKTISVDESQPVSQLMMTVCNKIGIS 123


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 106 HINLKMADEKKGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLS 264
           H  ++  DE + + +   LKV   D A+    + +  P+ +LM   C++ G+S
Sbjct: 71  HYLVRNKDEIEYKRKIRLLKVRMLDGAVKTISVDESQPVSQLMMTVCNKIGIS 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,295
Number of Sequences: 27780
Number of extensions: 240397
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)