Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B12
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26840.1 68417.m03864 ubiquitin-like protein (SMT3) identical...    87   1e-17
At5g55160.1 68418.m06877 small ubiquitin-like modifier 2 (SUMO) ...    86   2e-17
At5g55170.1 68418.m06878 small ubiquitin-like modifier 3 (SUMO) ...    73   1e-13
At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO) ...    60   1e-09
At5g48710.1 68418.m06029 ubiquitin-related similar to SP|O13351 ...    48   7e-06
At5g55855.1 68418.m06962 hypothetical protein                          41   8e-04
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-...    41   8e-04
At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4...    27   8.3  

>At4g26840.1 68417.m03864 ubiquitin-like protein (SMT3) identical to
           Ubiquitin-like protein SMT3 SP:P55852 from[Arabidopsis
           thaliana]; identical to cDNA SMT3 protein GI:1707371
          Length = 100

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +1

Query: 127 DEKKGEN-EHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPI 303
           D+K G+   HINLKV  QD   V F+IK+ T L+KLMNAYCDR  + M  + F FDG+ +
Sbjct: 8   DKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRL 67

Query: 304 NXNDTPTSLXMEXGDTIXVYQQQTGG 381
               TP  L ME GD I     QTGG
Sbjct: 68  RAEQTPDELDMEDGDEIDAMLHQTGG 93


>At5g55160.1 68418.m06877 small ubiquitin-like modifier 2 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852 from
           [Arabidopsis thaliana]; identical to cDNA small
           ubiquitin-like modifier 2 (SUMO)  GI:22652843; contains
           Pfam profile PF00240: Ubiquitin family
          Length = 103

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/85 (48%), Positives = 50/85 (58%)
 Frame = +1

Query: 127 DEKKGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPIN 306
           D+K  +  HINLKV  QD   V F+IK+ T L+KLMNAYCDR  +    + F FDG+ + 
Sbjct: 8   DKKPDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLR 67

Query: 307 XNDTPTSLXMEXGDTIXVYQQQTGG 381
              TP  L ME GD I     QTGG
Sbjct: 68  AEQTPDELEMEDGDEIDAMLHQTGG 92


>At5g55170.1 68418.m06878 small ubiquitin-like modifier 3 (SUMO)
           similar to SP|O13351 Ubiquitin-like protein smt3/pmt3
           {Schizosaccharomyces pombe}; identical to cDNA small
           ubiquitin-like modifier 3 (SUMO) GI:22652845
          Length = 111

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/81 (44%), Positives = 45/81 (55%)
 Frame = +1

Query: 142 ENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPINXNDTP 321
           +  H+ LKV  QD   V FK KK  PL+KLM  YCDR GL +    F F+G  I   +TP
Sbjct: 14  QEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNGARIGGLETP 73

Query: 322 TSLXMEXGDTIXVYQQQTGGV 384
             L ME GD I   +  +GG+
Sbjct: 74  DELDMEDGDVIDACRAMSGGL 94


>At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852
           [Arabidopsis thaliana]; contains INTERPRO:IPR000626
           ubiquitin domain; contains Pfam profile PF00240:
           Ubiquitin family; contains Pfam profile PF00240:
           Ubiquitin family;  identical to cDNA small
           ubiquitin-like modifier 5 (SUMO) mRNA GI:22652847
          Length = 108

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/91 (34%), Positives = 45/91 (49%)
 Frame = +1

Query: 109 INLKMADEKKGENEHINLKVLXQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXF 288
           ++ K    +   +  + LKV  Q  A   +KI  H  L+KLM+AYC +  L    VRF +
Sbjct: 13  VSKKSRSPETSPHMKVTLKVKNQQGAEDLYKIGTHAHLKKLMSAYCTKRNLDYSSVRFVY 72

Query: 289 DGQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
           +G+ I    TP  L ME  D I +  +  GG
Sbjct: 73  NGREIKARQTPAQLHMEEEDEICMVMELGGG 103


>At5g48710.1 68418.m06029 ubiquitin-related similar to SP|O13351
           Ubiquitin-like protein smt3/pmt3 {Schizosaccharomyces
           pombe}
          Length = 114

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +1

Query: 115 LKMADEKK---GENEHINLKVLXQDNAIVQ-FKIKKHTPLRKLMNAYCDRAGLSMQVVRF 282
           +KM  +K+    +  H+ LKV  QD    + F ++++  L K+M  Y    G+     RF
Sbjct: 12  VKMEGQKRKVVSDPTHVTLKVKGQDEEDFRVFWVRRNAKLLKMMELYTKMRGIEWNTFRF 71

Query: 283 XFDGQPINXNDTPTSLXMEXGDTIXVYQQQTGG 381
            FDG  I    TP  L  + GD I     Q  G
Sbjct: 72  LFDGSRIREYHTPDELERKDGDEIDAMLCQQSG 104


>At5g55855.1 68418.m06962 hypothetical protein
          Length = 59

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 229 LMNAYCDRAGLSMQVVRFXFDGQPINXNDTPT---SLXMEXGDTIXVYQQQTGGVS 387
           +M AY D+ G  M   RF  DG  I  N TP     L +E GD I  +  Q  G S
Sbjct: 1   MMQAYSDKVGQQMSAFRFHCDGIRIKPNQTPNEELQLDLEDGDEIDAFVDQIAGFS 56


>At1g68185.1 68414.m07789 ubiquitin-related similar to
           ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
           yeast]
          Length = 215

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +1

Query: 145 NEHINLKVLXQD-NAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFXFDGQPINXNDTP 321
           N+   + +  QD +     ++       +++  Y D+A L  Q + F FDG  I+ + TP
Sbjct: 138 NDRAKIVITIQDKDGQKTLRVFADEKFERVIKLYTDKAKLDPQNLVFIFDGDKIDPSTTP 197

Query: 322 TSLXMEXGDTIXVYQQQT 375
           + L ME  D I V+ ++T
Sbjct: 198 SELGMEDHDMIEVHTKKT 215


>At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4) /
           HD-ZIP protein 4 SP|Q05466|HAT4_ARATH Homeobox-leucine
           zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466)
           [Arabidopsis thaliana] (HD-ZIP homeotic protein Athb-2
          Length = 284

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 121 MADEKKGENEHINLKVLXQDNAIVQFKIKKHTPLR-KLMNAYCDRAGLSMQVVRFXFDGQ 297
           ++D++ G+N    L++    +AI++   K H+ L  K   A   + GL  + V   F  +
Sbjct: 118 ISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNR 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,025,085
Number of Sequences: 28952
Number of extensions: 206373
Number of successful extensions: 336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)