Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_B10
(407 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 27 4.5
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 27 4.5
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 27 4.5
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 27 4.5
SB_4186| Best HMM Match : ADK (HMM E-Value=0.094) 27 4.5
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 27 4.5
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 27 5.9
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05) 27 7.8
>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 185 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKK 307
+WS+KA MRHLK+V RRF+NGF+EG +K
Sbjct: 2 NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQK 42
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 202 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 257
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 28 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 83
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 203 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 258
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 189 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 189 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 120 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 175
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 189 ATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
Length = 1053
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 68 RSLRYPSSSCHSLTIRKRYK 9
R++ PSS+CH L RYK
Sbjct: 463 RNVSVPSSNCHELATESRYK 482
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 STSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 193
+T+ K R NK C CG S QKS C G + + HW+
Sbjct: 189 ATTHKSPSSHPKTHSRENKQVQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +1
Query: 154 WISCSKITILPLVSEG*AQEDYWNWPHASF 243
W++C K+ +LP+ ++ Y W + F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +1
Query: 154 WISCSKITILPLVSEG*AQEDYWNWPHASF 243
W++C K+ +LP+ ++ Y W + F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326
>SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)
Length = 1086
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 9 FISLSDCQRVTR*RRVPQASVSAEIRPIRYAE 104
F LSD R R RR+ + ++ IR + ++E
Sbjct: 111 FTMLSDASRTNRPRRIRERKLTGRIRSVTHSE 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,784,071
Number of Sequences: 59808
Number of extensions: 198926
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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