Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B10
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...   120   5e-28
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...   116   6e-27
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...   115   1e-26
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai...    29   1.2  
At5g16940.1 68418.m01985 expressed protein contains Pfam profile...    29   1.6  
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport...    25   3.1  
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    26   8.5  
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ...    26   8.5  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    26   8.5  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    26   8.5  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score =  120 bits (288), Expect = 5e-28
 Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
 Frame = +2

Query: 44  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 223
           MTKGT SFGKRRNK+HTLC RCG  S+HIQKS+C+ C YPAA+ R+Y+WSVKA       
Sbjct: 1   MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 224 XXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVXSS 322
              MR+L+ V RRF+ GF+EG    P+ K V SS
Sbjct: 61  TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASS 94


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score =  116 bits (279), Expect = 6e-27
 Identities = 51/93 (54%), Positives = 64/93 (68%)
 Frame = +2

Query: 44  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 223
           M KGT SFGKRRNK+HTLC RCG  S+HIQKS+C+ C YPAA+ R+Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 224 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVXSS 322
              MR+L+ V RRF+ GF+EG    P+    +S
Sbjct: 61  TGRMRYLRNVPRRFKTGFREGTEAKPRSKASAS 93


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score =  115 bits (276), Expect = 1e-26
 Identities = 54/94 (57%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = +2

Query: 44  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 223
           M KGT SFGKRRNK+HTLC RCG  S+HIQKS+C+ C YPAA+ R+Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 224 XXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVXSS 322
              MR+L+ V RRF+  F+EG + TP  KA  SS
Sbjct: 61  TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASS 94


>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 215

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 92  TLCRRCGXSSYHIQK-SKCAQCGY 160
           T C RCG  +YH Q  + C  CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209


>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
           PF04828: Protein of unknown function (DUF636)
          Length = 135

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 17  SFGLSTSDKMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKS 139
           +F L    K    T +FG    K HT C+ CG +S++I +S
Sbjct: 51  NFELLDDSKDFITTYTFGTHTAK-HTFCKVCGITSFYIPRS 90


>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
            putative similar to multidrug-resistant protein CjMDR1
            GI:14715462 from [Coptis japonica]; contains Pfam
            profiles PF00005: ABC transporter, PF00664: ABC
            transporter transmembrane region
          Length = 1292

 Score = 25.4 bits (53), Expect(2) = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 105  DVVXRHITFKNQNAPNVDILQ 167
            D+  RHI+FK  + P+V I Q
Sbjct: 1047 DIELRHISFKYPSRPDVQIFQ 1067



 Score = 20.6 bits (41), Expect(2) = 3.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 153  VDILQQNYDPTTGQ 194
            + +LQ+ YDP +GQ
Sbjct: 1093 IALLQRFYDPDSGQ 1106


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 71  KRRNKTHTLCRRCGXSSYHI----QKSKCAQCG 157
           K  +K H +C RC  +S+ +     K  C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183


>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 801

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 71  KRRNKTHTLCRRCGXSSYHI----QKSKCAQCG 157
           K  +K H +C RC  +S+ +     K  C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 41  KMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQC 154
           K+ + T+S  +R+ K  + C RCG + +   K  C  C
Sbjct: 157 KVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 41  KMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQC 154
           K+ + T+S  +R+ K  + C RCG + +   K  C  C
Sbjct: 157 KVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,500,910
Number of Sequences: 28952
Number of extensions: 138063
Number of successful extensions: 315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)