Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_B07
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_56| Best HMM Match : Actin (HMM E-Value=0) 139 2e-33
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 139 2e-33
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 8e-22
SB_54| Best HMM Match : Actin (HMM E-Value=0) 62 4e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 2e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 56 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 5e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 44 8e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 42 4e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 38 0.005
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.081
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.57
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 30 1.7
SB_46582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05) 27 9.3
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1) 27 9.3
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 27 9.3
SB_1849| Best HMM Match : His_leader (HMM E-Value=6.2) 27 9.3
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 139 bits (336), Expect = 2e-33
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +2
Query: 236 PAIRAVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 415
P + VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 416 PEEHP 430
PEEHP
Sbjct: 99 PEEHP 103
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +1
Query: 133 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 249
++ LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 5 EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3
Query: 417 PRNTQVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
P VLLTEAPLNPKANREKMTQIMFETFN+PAMYV IQ
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTGIV+DS DGV+
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVT 161
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 139 bits (336), Expect = 2e-33
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +2
Query: 236 PAIRAVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 415
P + VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 97
Query: 416 PEEHP 430
PEEHP
Sbjct: 98 PEEHP 102
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 249
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3
Query: 417 PRNTQVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
P VLLTEAPLNPKANREKMTQIMFETFN+PAMYV IQ
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 137
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTGIV+DS DGV+
Sbjct: 130 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVT 160
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 139 bits (336), Expect = 2e-33
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +2
Query: 236 PAIRAVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 415
P + VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 97
Query: 416 PEEHP 430
PEEHP
Sbjct: 98 PEEHP 102
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 249
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3
Query: 417 PRNTQVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
P VLLTEAPLNPKANREKMTQIMFETFN+PAMYV IQ
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 137
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTGIV+DS DGV+
Sbjct: 130 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVT 160
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 139 bits (336), Expect = 2e-33
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +2
Query: 236 PAIRAVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 415
P + VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 416 PEEHP 430
PEEHP
Sbjct: 99 PEEHP 103
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 249
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3
Query: 417 PRNTQVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
P VLLTEAPLNPKANREKMTQIMFETFN+PAMYV IQ
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTGIV+DS DGV+
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVT 161
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 139 bits (336), Expect = 2e-33
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +2
Query: 236 PAIRAVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 415
P + VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 416 PEEHP 430
PEEHP
Sbjct: 99 PEEHP 103
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/42 (83%), Positives = 37/42 (88%)
Frame = +1
Query: 124 ATKKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 249
A + LV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 ADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3
Query: 417 PRNTQVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
P VLLTEAPLNPKANREKMTQIMFETFN+PAMYV IQ
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTGIV+DS DGVS
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVS 161
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 100 bits (240), Expect = 8e-22
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +2
Query: 236 PAIRAVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 394
P + VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 249
LV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTGIV+DS DGV+
Sbjct: 93 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVT 123
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 468 NREKMTQIMFETFNTPAMYVGIQ 536
N + M +IMFETFN+PAMYV IQ
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQ 100
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +3
Query: 432 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
VLLTEAPLNPK NRE+M Q+MFE+FN P MYV +Q
Sbjct: 2148 VLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQ 2182
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 246
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 517 PCTS-ASKXVLSLYAXGRTTGIVLDSXDGVS 606
PC A + V++LYA GRTTG V D DGVS
Sbjct: 2175 PCMYVAVQAVMALYASGRTTGTVFDCGDGVS 2205
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 246
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 417 PRNTQVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
PRNT+VLLTE PLNP NREKM ++MFE + +Y+ IQ
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQ 141
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +2
Query: 272 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 394
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 237
+V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 529 ASKXVLSLYAXGRTTGIVLDSXDGVSTRC 615
A + VL+LYA G TG+V+DS DGV+ C
Sbjct: 139 AIQAVLTLYAQGLLTGVVIDSGDGVTHIC 167
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3
Query: 432 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQ 536
VLLTEAPLNP+ NREK ++ FETFN PA+++ +Q
Sbjct: 129 VLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQ 163
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P + + VLSLYA GRTTG+VLD+ DGVS
Sbjct: 156 PALFISMQAVLSLYATGRTTGVVLDAGDGVS 186
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 260 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 427
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1
Query: 145 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 240
+V+DNG G+ K GFAGD PR + P++VG P+
Sbjct: 703 IVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -1
Query: 243 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQARQLL 130
MA + D GE+G+ SI+S ETGLAHTGAI+ Q+ ++
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDII 38
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +1
Query: 514 PPCTSASKXVLSLYAXGRTTGIVLDSXDGVS 606
P A + VLSLYA GRTTG+V DS DGVS
Sbjct: 9 PAVYVAIQAVLSLYASGRTTGVVFDSGDGVS 39
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 489 IMFETFNTPAMYVGIQ 536
IMFE FN+PA+YV IQ
Sbjct: 1 IMFEAFNSPAVYVAIQ 16
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +3
Query: 432 VLLTEAPLNPKANREKMTQIMFETFNTPAMYV 527
+L++EA N + REK+T++MFE +N PA ++
Sbjct: 36 LLMSEAAWNTRIKREKLTELMFEKYNVPAFFL 67
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.081
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 281 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 403
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 133 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGR 252
K+ LV+D G+ K GFA + APR++ P+ + + + + R
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSERR 270
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 218 GNTARGASSPAKPALHIPEPLSTT 147
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 218 GNTARGASSPAKPALHIPEPLSTT 147
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 218 GNTARGASSPAKPALHIPEPLSTT 147
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 185 SQEMMLLAPCSPRSWEGPAIRAVMVGMGQKDSYVGDEAQ 301
S E + APCSPRS P I M G G + S+V +E +
Sbjct: 803 SLESSIEAPCSPRSASKPVISGEMNG-GPRASHVIEETE 840
>SB_46582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 193 LLRNRPCTYRSHCLLPSAATSSSH 122
+LRNRP T+R LPS T+ +H
Sbjct: 58 ILRNRPITFRLQVCLPSLQTAFNH 81
>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = -3
Query: 472 LLALGLRGASVSRTWVFLGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFALCL 293
++ + L A V+R + + GG+ ++ + G++ ++ V+ ++ G + S L
Sbjct: 983 IMRVFLYRARVTRVFHYQGGNMRIAISGLLHACCYIRVVTRVLLYQGGYTRVAISGRLHA 1042
Query: 292 ISYIRVLLSHTDHHG 248
YIRV+ H G
Sbjct: 1043 CCYIRVVTRVMQHQG 1057
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 218 GNTARGASSPAKPALHIPEPLSTT 147
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 218 GNTARGASSPAKPALHIPEPLSTT 147
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
Length = 596
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 301 LCLISYIRVLLSHTDHHGPDGGAFPRSRGTRRE 203
LC++ R + +H PDGG GT+RE
Sbjct: 539 LCMVLCARTSACVSFNHRPDGGICQLKNGTKRE 571
>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
Length = 535
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 247 PDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLL--PSAATSSSH 122
P+G + P+ + +++ HH + T R HC+L P T SH
Sbjct: 110 PNGVSSPKKK--KKKHHHKHEEKHFTDRDHCILDNPKEKTHLSH 151
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +2
Query: 521 VRRHPX-PCSRCTRXVVPP 574
+RR+P PCS CT+ +PP
Sbjct: 216 IRRYPTEPCSLCTKPALPP 234
>SB_1849| Best HMM Match : His_leader (HMM E-Value=6.2)
Length = 135
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 313 TSFALCLISYIRVLLSHTDHHGPDGGAFPRSRGTRREEHH 194
+ F+L + + + ++DH PD A+ R T ++ HH
Sbjct: 3 SGFSLSVQAVLTSETWYSDHQNPDSEAYQSLRATIQDNHH 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,439,537
Number of Sequences: 59808
Number of extensions: 499330
Number of successful extensions: 1431
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -