BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_B05 (562 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 1.9 SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.5 SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 5.8 SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 5.8 >SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component |Schizosaccharomyces pombe|chr 3|||Manual Length = 809 Score = 27.1 bits (57), Expect = 1.9 Identities = 14/73 (19%), Positives = 35/73 (47%) Frame = +2 Query: 224 YPRFPDYKDPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAK 403 + R Y+ P++ + ++S K + + ++LK+ E +++ K + E+ + Sbjct: 630 HSRVDRYEHPKVLEDNDSTISSLESLKRE---NEELREQLKVEHEENISMQKQLSELKGE 686 Query: 404 LWKIKHLIKITPI 442 L ++ K +PI Sbjct: 687 LNTLRSARKASPI 699 >SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 767 Score = 26.6 bits (56), Expect = 2.5 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = +2 Query: 332 LDELKIHEETRVTVVKNIPEINAKLWKI 415 + E+ H+ +R+ +V+NI I WK+ Sbjct: 278 IPEISFHDTSRLDLVRNIASIPKSRWKL 305 >SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1190 Score = 25.4 bits (53), Expect = 5.8 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = +2 Query: 143 FNPLVSIIRSKGYKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFXVERIKSSKHFPYWQ 322 F P++ +I++ + PGGI P P P DP S+ +++ K + Sbjct: 741 FQPILELIKASPTELPGGI--PRKRRVLPELPLAPDPPPFTSQKITLKQTKQA------D 792 Query: 323 KRILDELKI 349 R+L++LKI Sbjct: 793 MRLLNKLKI 801 >SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 1115 Score = 25.4 bits (53), Expect = 5.8 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 401 KLWKIKHLIKITPIEFPYGEPT 466 K+W +++L + PI FP G PT Sbjct: 239 KVWDLRNLSSLVPIPFPAG-PT 259 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,389,611 Number of Sequences: 5004 Number of extensions: 49266 Number of successful extensions: 106 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 106 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 236012634 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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